MSPC pipeline

MSPC specifications

Information


Unique identifier OMICS_08438
Name MSPC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A BED file for each replicate, containing enriched regions (i.e. peaks) called with a permissive p-value threshold.
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Marco J. Morelli <>

Publication for MSPC

MSPC IN pipeline

2016
PMCID: 5059478
PMID: 27703156
DOI: 10.1038/ncomms12923

[…] data sets were available from independent sources for the same mouse developmental time point, and these samples were treated as biological replicates. biological replicates were combined using mspc (ref. 55), using the following parameters -r biological -s 1e-10 -w 1e-6. the confirmed peaks were assigned the best p value, as defined by macs, among the overlapping peaks., the obtained lists […]

MSPC institution(s)
Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Piazza L da Vinci, Milan, Italy; Center for Genomic Science of [email protected], Istituto Italiano di Tecnologia (IIT), Milan, Italy

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