MSPminer specifications


Unique identifier OMICS_29280
Name MSPminer
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A matrix made up of rows and columns giving the number of reads mapped on genes across metagenomic samples.
Input format TSV
Operating system Unix/Linux
Programming languages C++
Parallelization OpenMP
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes


No version available


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Publication for MSPminer

MSPminer institution(s)
Enterome, Paris, France; MGP MetaGénoPolis, INRA, Université Paris-Saclay, Jouy en Josas, France; Centrale Supélec, Université Paris Saclay, Gif-sur-Yvette, France; Centre for Host Microbiome Interactions, Dental Institute, King’s College London, London, UK
MSPminer funding source(s)
Supported by Enterome, the ANRT (Association Nationale de la Recherche et de la Technologie) via the grant CIFRE 2014/0057 and INRA MetaGenoPolis via the grant “Investissements d'avenir” ANR-11-DPBS-0001.

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