MSqRob specifications


Unique identifier OMICS_17776
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data The name of the project, the location where the output needs to be saved, MaxQuant’s peptides file and an experimental annotation file.
Input format txt (MaxQuant’s peptides file)
Output data A volcano plot in which proteins can be selected for further inspection with a detail plot and results table.
Operating system Unix/Linux, Windows
Programming languages Javascript, R
Computer skills Advanced
Version 0.6.3
Stability Stable
Requirements lme4
Maintained Yes



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  • person_outline Ludger Goeminne <>

MSqRob article

MSqRob institution(s)
Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Belgium; VIB-UGent Center for Medical Biotechnology, VIB, Belgium; Department of Biochemistry, Ghent University, Belgium; Bioinformatics Institute Ghent, Ghent University, Belgium
MSqRob funding source(s)
Supported by IAP research network “StUDyS” grant no. P7/06 of the Belgian government (Belgian Science Policy), the Multidisciplinary Research Partnership “Bioinformatics: from nucleotides to networks” of Ghent University, a Ph.D. grant from the Flanders Innovation & Entrepreneurship agency, Flanders (Agentschap Innoveren & Ondernemen – Vlaanderen) entitled ‘Differential proteomics at peptide, protein and module level’ (141573).

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