MSqRob specifications

Unique identifier:
OMICS_17776
Interface:
Command line interface, Graphical user interface
Input data:
The name of the project, the location where the output needs to be saved, MaxQuant’s peptides file and an experimental annotation file.
Output data:
A volcano plot in which proteins can be selected for further inspection with a detail plot and results table.
Programming languages:
Javascript, R
Version:
0.6.3
Requirements:
lme4
Software type:
Package/Module
Restrictions to use:
None
Input format:
txt (MaxQuant’s peptides file)
Operating system:
Unix/Linux, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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MSqRob distribution

download

MSqRob support

Documentation

Maintainer

  • Ludger Goeminne <>

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Publications

Institution(s)

Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Belgium; VIB-UGent Center for Medical Biotechnology, VIB, Belgium; Department of Biochemistry, Ghent University, Belgium; Bioinformatics Institute Ghent, Ghent University, Belgium

Funding source(s)

Supported by IAP research network “StUDyS” grant no. P7/06 of the Belgian government (Belgian Science Policy), the Multidisciplinary Research Partnership “Bioinformatics: from nucleotides to networks” of Ghent University, a Ph.D. grant from the Flanders Innovation & Entrepreneurship agency, Flanders (Agentschap Innoveren & Ondernemen – Vlaanderen) entitled ‘Differential proteomics at peptide, protein and module level’ (141573).

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