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MSQuant specifications


Unique identifier OMICS_02487
Name MSQuant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Stability Stable
Maintained Yes


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MSQuant in publications

PMCID: 5392931
PMID: 28412970
DOI: 10.1186/s12918-016-0381-1

[…] with mascot score <10 were removed and only the highest scoring peptide matches for each query listed under the highest scoring protein (bold red) were selected. proteins were quantified using msquant version 2.0b7 [] by importing the mascot results html file with the corresponding raw mass spectrometric data files. msquant automatically calculated peptide and protein ratios by using a 13c […]

PMCID: 5376343
PMID: 28306714
DOI: 10.1371/journal.pcbi.1005432

[…] phospho-ser/thr, phospho-tyr, silac-labels: lys-8 and arg-10. all significant hits (p<0.05) were manually inspected., quantification was done on at least two ms spectra per protein by using msquant v1.4.1 software developed by mann and colleagues [] ( data were manually inspected and corrected when necessary., the first dataset was obtained […]

PMCID: 5035359
PMID: 27699280
DOI: 10.1016/j.heliyon.2016.e00159

[…] specificity as well as the instrument settings were kept unchanged. parsing of data and statistical analysis of the search results reported by mascot were performed using the open-source software msquant ., protein samples in sds-sample buffer were separated on sds-page. proteins were electrophoretically transferred to hybond-p filters (amersham biosciences), which were then blocked for one […]

PMCID: 5006282
PMID: 27576892
DOI: 10.1186/s12864-016-3033-3

[…] the protein binding profile of m4 wild-type (wt) versus m4 mutant baits (fig. ). following trypsin digestion and nanolc-ms 314 out of more than 1000 identified proteins were quantified by the msquant software [] utilizing lysine-containing tryptic peptides. most of the isotopic variants of quantified peptides were present in almost equal amounts (indicated by approximate one-to-one silac […]

PMCID: 4889922
PMID: 26912830
DOI: 10.1093/nar/gkw105

[…] or 1000 counts for ms2 depending on the experiment. an activation q = 0.25 and activation time of 30 ms was applied., raw files were processed into peak lists by dtasupercharge 2.0b1 [part of the msquant 2.0b7 software environment ()] and searched with mascot 2.2 against the human international protein index protein database (ipi, version 3.65) combined with frequently observed contaminants […]

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MSQuant institution(s)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Center for Experimental Bioinformatics, Odense, Denmark

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