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Citations per year

Number of citations per year for the bioinformatics software tool MSR

Tool usage distribution map

This map represents all the scientific publications referring to MSR per scientific context
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MSR specifications


Unique identifier OMICS_05370
Name MSR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C, MATLAB, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


Publication for MSR

MSR citations


Complete Genome Sequence of Magnetospirillum sp. ME 1, a Novel Magnetotactic Bacterium Isolated from East Lake, Wuhan, China

Genome Announc
PMCID: 5571398
PMID: 28839012
DOI: 10.1128/genomeA.00485-17
call_split See protocol

[…] ly controlled by the magnetosome island (MAI) (). To date, complete MTB genome sequences have been reported for just seven strains: Magnetospirillum magneticum AMB-1, Magnetospirillum gryphiswaldense MSR-1, Magnetospira sp. QH-2, Magnetospirillum sp. XM-1, Magnetococcus marinus MC-1, “Candidatus Magnetococcus massalia” MO-1, and Desulfovibrio magneticus RS-1 (). Furthermore, the molecular mechanis […]


MeCP2 recognizes cytosine methylated tri nucleotide and di nucleotide sequences to tune transcription in the mammalian brain

PLoS Genet
PMCID: 5446194
PMID: 28498846
DOI: 10.1371/journal.pgen.1006793

[…] We used the MSR tool to find domains of MeCP2 enrichment and depletion relative to the Input sample []. As background, we used a mappability map for the m9 genome (parameters: L = 45, P-value threshold: 1e-6). Fo […]


Coexistence of Fosfomycin and Colistin Resistance in Klebsiella pneumoniae: Whole Genome Shotgun Sequencing

Genome Announc
PMCID: 5122681
PMID: 27881539
DOI: 10.1128/genomeA.01303-16

[…] minoglycoside (aadA2, aacA4, armA, aph(3′)-Vla), beta-lactam (blaOXA-1, blaCTX-M-15, blaOXA-232, blaNDM-1, blaSHV-28, blaTEM-1A), fluoroquinolone (aac(6′)lb-cr), fosfomycin (fosA), macrolide (mph(E), msr(E)), phenicol (catB3), sulfonamide (sul1), tetracycline (tet(D), and trimethoprim (dfrA14, dfrA12). However, plasmid-mediated colistin resistance genes mcr-1 and mcr-2 were absent. B6753 had a mut […]

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MSR institution(s)
Institute for Systems Biology, Seattle, WA, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; University of Southern California Epigenome Center, University of Southern California, Keck School of Medicine, Los Angeles, CA, USA; Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, Netherlands; Faculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Delft, Netherlands
MSR funding source(s)
Supported by NIH grant U54-AI54253, NIH contract HHSN272200700038C from the National Institute of Allergy and Infectious Diseases, NIH/NIAID award U19AI100627, NIH/NIAID award R01AI025032, NIH award K25HL098807, and NIH award R01HG002939.

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