MSR statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MSR
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Tool usage distribution map

This map represents all the scientific publications referring to MSR per scientific context
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Protocols

MSR specifications

Information


Unique identifier OMICS_05370
Name MSR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C, MATLAB, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MSR

MSR citations

 (3)
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Complete Genome Sequence of Magnetospirillum sp. ME 1, a Novel Magnetotactic Bacterium Isolated from East Lake, Wuhan, China

2017
Genome Announc
PMCID: 5571398
PMID: 28839012
DOI: 10.1128/genomeA.00485-17
call_split See protocol

[…] ly controlled by the magnetosome island (MAI) (). To date, complete MTB genome sequences have been reported for just seven strains: Magnetospirillum magneticum AMB-1, Magnetospirillum gryphiswaldense MSR-1, Magnetospira sp. QH-2, Magnetospirillum sp. XM-1, Magnetococcus marinus MC-1, “Candidatus Magnetococcus massalia” MO-1, and Desulfovibrio magneticus RS-1 (). Furthermore, the molecular mechanis […]

library_books

MeCP2 recognizes cytosine methylated tri nucleotide and di nucleotide sequences to tune transcription in the mammalian brain

2017
PLoS Genet
PMCID: 5446194
PMID: 28498846
DOI: 10.1371/journal.pgen.1006793

[…] We used the MSR tool to find domains of MeCP2 enrichment and depletion relative to the Input sample []. As background, we used a mappability map for the m9 genome (parameters: L = 45, P-value threshold: 1e-6). Fo […]

library_books

Coexistence of Fosfomycin and Colistin Resistance in Klebsiella pneumoniae: Whole Genome Shotgun Sequencing

2016
Genome Announc
PMCID: 5122681
PMID: 27881539
DOI: 10.1128/genomeA.01303-16

[…] minoglycoside (aadA2, aacA4, armA, aph(3′)-Vla), beta-lactam (blaOXA-1, blaCTX-M-15, blaOXA-232, blaNDM-1, blaSHV-28, blaTEM-1A), fluoroquinolone (aac(6′)lb-cr), fosfomycin (fosA), macrolide (mph(E), msr(E)), phenicol (catB3), sulfonamide (sul1), tetracycline (tet(D), and trimethoprim (dfrA14, dfrA12). However, plasmid-mediated colistin resistance genes mcr-1 and mcr-2 were absent. B6753 had a mut […]


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MSR institution(s)
Institute for Systems Biology, Seattle, WA, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; University of Southern California Epigenome Center, University of Southern California, Keck School of Medicine, Los Angeles, CA, USA; Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, Netherlands; Faculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Delft, Netherlands
MSR funding source(s)
Supported by NIH grant U54-AI54253, NIH contract HHSN272200700038C from the National Institute of Allergy and Infectious Diseases, NIH/NIAID award U19AI100627, NIH/NIAID award R01AI025032, NIH award K25HL098807, and NIH award R01HG002939.

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