MSR statistics

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Citations per year

Citations chart

Popular tool citations

chevron_left Genomic region enrichment analysis Data integration Data integration Data visualization chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

MSR specifications


Unique identifier OMICS_05370
Name MSR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C, MATLAB, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for MSR

MSR in pipeline

PMCID: 5446194
PMID: 28498846
DOI: 10.1371/journal.pgen.1006793

[…] [] (, , figs) and the hypothalamus chip-seq dataset [] was correlated with bisulfite data from hypothalamus wgbs (this study) (figs and and , figs) or bisulfite data from [] ()., we used the msr tool to find domains of mecp2 enrichment and depletion relative to the input sample []. as background, we used a mappability map for the m9 genome (parameters: l = 45, p-value threshold: 1e-6). […]

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MSR institution(s)
Institute for Systems Biology, Seattle, WA, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; University of Southern California Epigenome Center, University of Southern California, Keck School of Medicine, Los Angeles, CA, USA; Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, Netherlands; Faculty of Electrical Engineering, Mathematics and Computer Science, Delft University of Technology, Delft, Netherlands
MSR funding source(s)
Supported by NIH grant U54-AI54253, NIH contract HHSN272200700038C from the National Institute of Allergy and Infectious Diseases, NIH/NIAID award U19AI100627, NIH/NIAID award R01AI025032, NIH award K25HL098807, and NIH award R01HG002939.

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