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mStruct specifications

Information


Unique identifier OMICS_04407
Name mStruct
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Suyash Shringarpure

Publication for mStruct

mStruct citations

 (4)
library_books

A less‐biased analysis of metalloproteins reveals novel zinc coordination geometries

2015
Proteins
PMCID: 4539273
PMID: 26009987
DOI: 10.1002/prot.24834

[…] clustering and Spearman's correlation. To construct the CG‐based structural distance matrix, we calculated a root‐mean‐square‐deviation‐like distance matrix between each cluster based on angles: (10)Mstruct=m11⋯mk1⋮⋱⋮m1k⋯mkk, with mxy = ∑q=1s(y)∑p=1s(x)1A∑i=1A(axp,i−ayq,i)2where, k is the clustering number k in k‐means, A is the number of angles (A = 6 for four‐ligand CGs), and s(x) and s(y) are […]

library_books

Powder diffraction in Bragg–Brentano geometry with straight linear detectors

2015
J Appl Crystallogr
PMCID: 4379442
PMID: 25844084
DOI: 10.1107/S1600576715003465

[…] ny additional instrumental precautions. Other programs such as e.g. Fullprof (Rodríguez-Carvajal, 1993), Maud (Lutterotti et al., 1999), GSAS (Larson & Von Dreele, 2000), PM2K (Leoni et al., 2006) or MStruct (Materěj et al., 2014) use phenomenological peak functions, e.g. pseudo-Voigt or Pearson VII (Young & Wiles, 1982), with angluar dependence of profile parameters (FWHM, shape parameter and asy […]

library_books

Multi population GWA mapping via multi task regularized regression

2010
Bioinformatics
PMCID: 2881376
PMID: 20529908
DOI: 10.1093/bioinformatics/btq191

[…] al markers. We assume that the population label for each individual is either known or has been inferred from the genotype, e.g. by using well-known programs such as Structure (Pritchard et al., ) or mStruct (Shringarpure and Xing, ).As illustrated in , the MPGL (a) can detect causal SNPs in multiple populations jointly, unlike standard regression techniques applied on individuals in each populati […]

library_books

Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations

2009
BMC Genet
PMCID: 2797531
PMID: 19995433
DOI: 10.1186/1471-2156-10-80

[…] cluster individuals based on their diploid genotypes, in an unsupervised manner, without using prior knowledge of their populations of origin (additional programs in this collection include BAPS [,], mStruct [], and Structurama []). Using the admixture model of individual affiliations, for each individual Structure determines the fractions of genetic affiliation of the individual in each of a pred […]

Citations

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mStruct institution(s)
School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA

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