mSWEEP specifications


Unique identifier OMICS_30066
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Stability Stable
cmake, kallisto
Maintained Yes




No version available


  • person_outline Antti Honkela

Publication for mSWEEP

mSWEEP institution(s)
Helsinki Institute for Information Technology, Department of Mathematics and Statistics, University of Helsinki, Finland; Department of Biostatistics, University of Oslo, Norway; Wellcome Trust Sanger Institute, Hinxton, UK; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK; The Milner Center for Evolution, Department of Biology and Biochemistry, Bath University, Bath, UK; Department of Infectious Disease Epidemiology, Imperial College London, London, UK; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK; Department of Public Health, University of Helsinki, Finland
mSWEEP funding source(s)
Supported by the Academy of Finland grants no. 259440 and 310261, the JPI-AMR consortium SpARK (MR/R00241X/1), the ERC grant no. 742158 and the Norwegian Research Council JPIAMR grant no. 144501.

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