MTB Network Portal specifications

Information


Unique identifier OMICS_21573
Name MTB Network Portal
Alternative name Mycobacterium tuberculosis Network Portal
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Bacteria
    • Mycobacterium tuberculosis

Maintainers


  • person_outline Nitin Baliga
  • person_outline David Sherman

Additional information


http://networks.systemsbiology.net/mtb/help

Publication for Mycobacterium tuberculosis Network Portal

MTB Network Portal citations

 (2)
library_books

Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase Dependent Remodeling of the Pathogen Environment Interface

2018
MBio
PMCID: 5845002
PMID: 29511081
DOI: 10.1128/mBio.02333-17

[…] ni-Hochberg-adjusted P values comparing active inhibitor data to control data, treating batch effects as a covariate.Gene symbols and gene products associated with Rv numbers were downloaded from the MTB Network Portal (http://networks.systemsbiology.net/mtb/). Gene ontology (GO) and KEGG Pathway functional categories were downloaded from PATRIC (). We removed duplications and functional categorie […]

library_books

Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity

2018
Sci Rep
PMCID: 5830583
PMID: 29491462
DOI: 10.1038/s41598-018-22237-5

[…] ferent cases, we obtained raw data from the wild-type strain and the phoP mutant from Solans et al.. We also downloaded ChIP-Seq data from the overexpression experiment of phoP (Rv0757_B167) from the MTB network portal. The circular diagram was constructed with the Circos tool and the values from the regulatory influence were extracted from the TFOE data set. […]

MTB Network Portal institution(s)
Institute for Systems Biology, Seattle, WA, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; Interdisciplinary Program of Pathobiology, Department of Global Health, University of Washington, Seattle, WA, USA; Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA; Departments of Biology and Microbiology, University of Washington, Seattle, WA, USA; Lawrence Berkeley National Lab, Berkeley, CA, USA
MTB Network Portal funding source(s)
Supported by Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Dept. of Health and Human Services under contract HHSN272200800059C and grant U19 AI106761, as well as The Camille Dreyfus Teacher-Scholar Award Program and the NIH Center for Systems Biology /2P50GM076547; by NIH Training Grant T32AI007509 and by the NSF Graduate Research Fellowship DGE-1144245.

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