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MTGD specifications

Information


Unique identifier OMICS_11994
Name MTGD
Alternative name Medicago truncatula genome database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Medicago truncatula

Maintainer


  • person_outline Vivek Krishkumar

Publication for Medicago truncatula genome database

MTGD citations

 (3)
library_books

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado

2016
PMCID: 4795932
PMID: 26989146
DOI: 10.1093/database/baw010

[…] databases. Some examples of genome databases that use Chado include the Hardwood Genomics Project (http://www.hardwoodgenomics.org/) (), the Banana Genome Hub (http://banana-genome.cirad.fr/) (), the Medicago truncatula genome database (http://medicago.jcvi.org/MTGD/?q=home) (), the i5k Workspace (https://i5k.nal.usda.gov/) () and the Arabidopsis Information Portal (https://www.araport.org).’The g […]

library_books

Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populus paralogues

2011
BMC Genomics
PMCID: 3123328
PMID: 21569431
DOI: 10.1186/1471-2164-12-236

[…] d no expression support for any of these suspected pseudogenes.Similar BLASTP searches were conducted against the Arabidopsis TAIR9 database [], the Rice Genome Annotation Database release 5 [,], the Medicago truncatula genome database MtDB v2.0 [], and the Vitis vinifera genome database (8X) at Genoscope []. The sequences were aligned for motif inspection as described above, yielding 55 putative […]

library_books

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

2010
BMC Plant Biol
PMCID: 2848761
PMID: 20199683
DOI: 10.1186/1471-2229-10-41

[…] by BLASTX and TBLASTX at an E-value cutoff of 10-4. The UniProt protein database [], the Pfam protein database [], the Arabidopsis thaliana genome database (TAIR, http://www.arabidopsis.org), and the Medicago truncatula genome database http://www.medicago.org were used for annotation purposes. TAIR gene ontology (GO) and GO slim annotations [] were provided for each Arabidopsis match. BLASTP resul […]

Citations

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MTGD institution(s)
Plant Genomics Group, J Craig Venter Institute, Chinakville, MD, USA
MTGD funding source(s)
This work was supported by the National Science Foundation (NSF) [Division of Integrative Organismal Systems award IOS- 0821966].

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