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Mtrack2 specifications

Information


Unique identifier OMICS_06575
Name Mtrack2
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Mtrack2 citations

 (38)
library_books

Tortuous Pore Path Through the Glaucomatous Lamina Cribrosa

2018
PMCID: 5940889
PMID: 29740064
DOI: 10.1038/s41598-018-25645-9

[…] lc on oct. the images were made isotropic (4.065 μm/pixel in all dimensions) prior to proceeding with the analysis., pore path was traced automatically in imagej using a particle tracking algorithm (mtrack2; implemented by nico stuurman), which allowed tracing of individual pores through the lc volume. the tracing was done from one c-mode to the next, using the centroid of the pores. to improve […]

library_books

The opposing forces of shear flow and sphingosine 1 phosphate control marginal zone B cell shuttling

2017
PMCID: 5741619
PMID: 29273735
DOI: 10.1038/s41467-017-02482-4

[…] slides and to an ibidi pump system filled with pre-warmed migration medium. images were acquired at ×10 on a leica dmi 6000 inverted wide-field microscope. cells were tracked using the imagej plugin mtrack2. migration parameters were calculated using the ibidi chemotaxis tool. the migration index was calculated as the average of the ratios of the projected y-coordinates of a cell’s end point […]

library_books

Optogenetic Rescue of Locomotor Dysfunction and Dopaminergic Degeneration Caused by Alpha Synuclein and EKO Genes

2017
PMCID: 5403912
PMID: 28442946
DOI: 10.5607/en.2017.26.2.97

[…] minute and a video was then recorded for 30 seconds at approximately 10 frames per second using a moticam3 digital camera (motic) and motic images plus 2.0 software. the video was analyzed using the mtrack2 plug-in (from http://valelab.ucsf.edu/~nico/ijplugins/mtrack2.html) for imagej (from http://rsb.info.nih.gov/ij/). the path length was recorded; scores were quantified as the distance […]

library_books

MET receptor variant R970C favors calpain dependent generation of a fragment promoting epithelial cell scattering

2017
PMCID: 5355264
PMID: 28061464
DOI: 10.18632/oncotarget.14499

[…] becton dickinson) and seeded in ibidi 15 μ slide 8 wells (gmbh, münchen, germany). images were acquired with the zen software (zeiss) at a rate of 1 image per time interval of 10min. the plugin mtrack2 implemented in the fiji software (nih) enabled to obtain the trajectory of each cell. data were processed with matlab (mathworks) to calculate the mean displacement for each cell. […]

library_books

Characterization of genetic loss of function of Fus in zebrafish

2016
PMCID: 5270537
PMID: 27898262
DOI: 10.1080/15476286.2016.1256532

[…] usb camera with the speed of 40 frames per second. a ruler was placed next to the dish to calibrate the track lengths in mm. the videos were processed in fiji using a customized macro script and mtrack2 plugin (http://valelab.ucsf.edu/∼nstuurman/ijplugins/mtrack2.html). only complete tracks were considered for statistical analysis., no potential conflicts of interest were disclosed., […]

library_books

Multisite Phosphorylation of NuMA Related LIN 5 Controls Mitotic Spindle Positioning in C. elegans

2016
PMCID: 5053539
PMID: 27711157
DOI: 10.1371/journal.pgen.1006291

[…] the spindle midzones were severed at anaphase onset and images of gfp-β-tubulin were taken at 0.5 s intervals. for analysis, the position of the spindle poles was automatically tracked using the mtrack2 plugin in imagej. peak velocities of the anterior and posterior spindle poles were determined within a 12.5 s time frame after ablation. representative videos for every strains are shown in – […]


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