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Popular tool citations

chevron_left 3D image analysis Particle tracking Cell tracking chevron_right
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Mtrack2 specifications

Information


Unique identifier OMICS_06575
Name Mtrack2
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Mtrack2 in publications

 (38)
PMCID: 5940889
PMID: 29740064
DOI: 10.1038/s41598-018-25645-9

[…] lc on oct. the images were made isotropic (4.065 μm/pixel in all dimensions) prior to proceeding with the analysis., pore path was traced automatically in imagej using a particle tracking algorithm (mtrack2; implemented by nico stuurman), which allowed tracing of individual pores through the lc volume. the tracing was done from one c-mode to the next, using the centroid of the pores. to improve […]

PMCID: 5741619
PMID: 29273735
DOI: 10.1038/s41467-017-02482-4

[…] slides and to an ibidi pump system filled with pre-warmed migration medium. images were acquired at ×10 on a leica dmi 6000 inverted wide-field microscope. cells were tracked using the imagej plugin mtrack2. migration parameters were calculated using the ibidi chemotaxis tool. the migration index was calculated as the average of the ratios of the projected y-coordinates of a cell’s end point […]

PMCID: 5403912
PMID: 28442946
DOI: 10.5607/en.2017.26.2.97

[…] minute and a video was then recorded for 30 seconds at approximately 10 frames per second using a moticam3 digital camera (motic) and motic images plus 2.0 software. the video was analyzed using the mtrack2 plug-in (from http://valelab.ucsf.edu/~nico/ijplugins/mtrack2.html) for imagej (from http://rsb.info.nih.gov/ij/). the path length was recorded; scores were quantified as the distance […]

PMCID: 5355264
PMID: 28061464
DOI: 10.18632/oncotarget.14499

[…] becton dickinson) and seeded in ibidi 15 μ slide 8 wells (gmbh, münchen, germany). images were acquired with the zen software (zeiss) at a rate of 1 image per time interval of 10min. the plugin mtrack2 implemented in the fiji software (nih) enabled to obtain the trajectory of each cell. data were processed with matlab (mathworks) to calculate the mean displacement for each cell. […]

PMCID: 5270537
PMID: 27898262
DOI: 10.1080/15476286.2016.1256532

[…] usb camera with the speed of 40 frames per second. a ruler was placed next to the dish to calibrate the track lengths in mm. the videos were processed in fiji using a customized macro script and mtrack2 plugin (http://valelab.ucsf.edu/∼nstuurman/ijplugins/mtrack2.html). only complete tracks were considered for statistical analysis., no potential conflicts of interest were disclosed., […]

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