Mtreemix statistics

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Mtreemix specifications

Information


Unique identifier OMICS_09050
Name Mtreemix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 1.3.00
Stability Stable
Maintained Yes

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Publication for Mtreemix

Mtreemix in publications

 (4)
PMCID: 4566396
PMID: 26358114
DOI: 10.1186/s12920-015-0132-y

[…] altered. then, alterations occurring on adjacent chromosomal bands were merged and considered as one alteration occurring on the merged band., once the e-fllat approach identified the atoms, we used mtreemix [], a software package for learning and using mixture models of oncogenic trees, to describe evolutionary processes that are characterized by the ordered accumulation of permanent genetic […]

PMCID: 3605089
PMID: 23555210
DOI: 10.1371/journal.pcbi.1002973

[…] the stability of these tree structures. for each region, a set of candidate tree structures are obtained for naïve and treatment-experienced patient from fitting 30 bootstrap samples. the program mtreemix was used to fit beerenwinkel's mixture model to data from naïve patients and an adaption to the mtreemix program was used to fit our prespecified mixture model to data […]

PMCID: 3031504
PMID: 21297946
DOI: 10.1371/journal.pone.0014638

[…] of genetic events, which is verified in this dataset as none of the mutations changed back to a variant form from the wild-type sequence over the course of the sti. we used the software package mtreemix ., viral rc increased during the duration of sti. between baseline and 2 months, median rc increased from 47.5% (iqr = 21.0%-70.5%) to 86.0% (49.0%-104.8%). at 4 months, median rc […]

PMCID: 2823712
PMID: 20053276
DOI: 10.1186/1471-2105-11-9

[…] with matlab bindings. another r package for conventional mixture analysis is the mix http://icarus.math.mcmaster.ca/peter/mix/mix.html package. an example for a rather specialized package would be mtreemix http://mtreemix.bioinf.mpi-sb.mpg.de/ which allows estimation of mixtures of mutagenic trees. in general it can be said that most of these packages focus rather narrowly on specific model […]


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Mtreemix institution(s)
Max Planck Institute for Informatics Stuhlsatzenhausweg, Saarbrücken, Germany; Institute of Virology, University of Cologne, Köln, Germany; Center of Advanced European Studies and Research Ludwig-Erhard-Allee 2, Germany

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