mubiomics specifications

Information


Unique identifier OMICS_01059
Name mubiomics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Roche
Operating system Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Robert Burk

Publication for mubiomics

mubiomics citation

library_books

Lactobacillus crispatus Dominant Vaginal Microbiome Is Associated with Inhibitory Activity of Female Genital Tract Secretions against Escherichia coli

2014
PLoS One
PMCID: 4013016
PMID: 24805362
DOI: 10.1371/journal.pone.0096659

[…] sequences were joined (using eautils’ fastq-join), processed to remove chimeras (using uchime), and low quality reads and nucleotides, and assigned to their sample of origin by demultiplexing (using mubiomics). Demultiplexed reads were aligned to the bacterial reference library - a vaginal microbiome reference library available from http://microbiome.fhcrc.org/apps/refpkg/, containing 633 sequenc […]

mubiomics institution(s)
Department of Pediatrics, Albert Einstein College of Medicine, Yeshiva University, New York, NY, USA; Department of Obstetrics, Gynecology and Women’s Health, Albert Einstein College of Medicine, Yeshiva University, New York, NY, USA; Department of Microbiology and Immunology, Albert Einstein College of Medicine, Yeshiva University, New York, NY, USA; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Yeshiva University, New York, NY, USA; Proyecto Epidemiologico Guanacaste, Fundacion INCIENSA, San Jose, Costa Rica; American Society of Clinical Pathology (ASCP) Institute, Washington, D.C., USA; Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, USA
mubiomics funding source(s)
Supported by the National Cancer Institute (CA78527) (RDB), the Einstein-Montefiore Center for AIDS funded by the NIH (AI-51519) and the Einstein Cancer Research Center (P30CA013330) from the National Cancer Institute.

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