MuCor statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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MuCor specifications

Information


Unique identifier OMICS_11095
Name MuCor
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data VCF files, GTF/GFF3 file, BED file
Output data The outputs range from high-level summaries to full, detailed reports in text and Microsoft Excel formats.
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Numpy, Pandas, HTSeq, pytabix, XlsxWriter, xlwt, bgzip, Tabix
Maintained Yes

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Documentation


Maintainer


  • person_outline James Blachly <>

Publication for MuCor

MuCor in publication

PMCID: 5628133
PMID: 28321123
DOI: 10.1038/leu.2017.86

[…] and varscan., all called variants underwent visual inspection of the aligned reads using the integrative genomics viewer (broad institute, cambridge, ma, usa). variant filtering was done using the mucor algorithm. the variant allele fraction (vaf) cut-off was set to 0.10 for inclusion into the analyses. to distinguish between driver and passenger mutations, the analysis was repeated with a vaf […]


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MuCor institution(s)
Division of Hematology, Department of Internal Medicine, The Ohio State University, Columbus, OH, USA; Department of Human Cancer Genetics and Molecular Virology, The Ohio State University, Columbus, OH, USA; Department of Pathology, The Ohio State University, Columbus, OH, USA; The Ohio State University James Comprehensive Cancer Center, Columbus, OH, USA
MuCor funding source(s)
This work was supported by the National Institutes of Health [P30 CA016058] and in part by an allocation of computing resources from The Ohio Supercomputer Center.

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