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MULE specifications


Unique identifier OMICS_15463
Alternative name Mining Uniquely Labeled Edgesets
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Koyuturk Mehmet

Publication for Mining Uniquely Labeled Edgesets

MULE citations


Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

Sci Rep
PMCID: 4663792
PMID: 26617401
DOI: 10.1038/srep17394

[…] r, the distribution of families was not. Red clover had a higher proportion of hAT, Stowaway and Pogo transposons than any of the other species analysed, but in contrast to M. truncatula did not have MULE transposons. […]


Spice: discovery of phenotype determining component interplays

BMC Syst Biol
PMCID: 3515406
PMID: 22583800
DOI: 10.1186/1752-0509-6-40

[…] sed on frequent subgraph mining [,], similar comments would still hold for the latter comment. In addition, the runtime for these approaches grows exponentially; even the most efficient ones, such as MULE [] that enumerates maximal frequent edge sets, took almost 57 days for a set of 98 network instances (details available upon request). While efficient heuristics have been reported [], they are t […]


NIBBS Search for Fast and Accurate Prediction of Phenotype Biased Metabolic Systems

PLoS Comput Biol
PMCID: 3349732
PMID: 22589706
DOI: 10.1371/journal.pcbi.1002490

[…] global metabolic reference map from the KEGG database –, which contains 1,348 vertices and 1,476 edges: 50 metabolic networks from aerobic organisms and 48 metabolic networks from anaerobic ones.The MULE algorithm of Koyutürk et al. is used to enumerate maximal frequent subgraphs for all support count thresholds between 1 and the number of positive instances required by MBS-Enum . MULE is select […]


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MULE funding source(s)
This research was supported in part by NIH grant R01 GM068959-01 and NSF grant CCR-0208709.

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