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MulRF specifications

Information


Unique identifier OMICS_06049
Name MulRF
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MulRF

MulRF in publications

 (3)
PMCID: 4971187
PMID: 27481787
DOI: 10.1098/rstb.2015.0335

[…] which is then used to reconstruct the species tree under the corresponding optimality criterion. finally, other methods try to minimize topological distances among gene trees, such as the rf [,] and mulrf [] supertree approaches., many species tree reconstruction methods explicitly consider a single evolutionary process. some rely on the optimization of a gene tree–species tree reconciliation […]

PMCID: 4851173
PMID: 25281847
DOI: 10.1093/sysbio/syu082

[…] leaf from one tree is mapped to at most one leaf from the other, restricting therefore the gene families that can be considered. however, very recently a generalization of the rf distance called mulrf was introduced that relaxes this constraint, allowing for one of the two trees in the distance calculation to have several leaves with the same label (). this multilabelled tree, or multree, […]

PMCID: 3874668
PMID: 24180377
DOI: 10.1186/1748-7188-8-28

[…] rf distance between two mul-trees; however, it is easy to calculate this distance between a mul-tree and a singly-labeled species tree. motivated by this, we formulate the rf problem for mul-trees (mulrf) as follows: given a collection of multi-copy gene trees, find a singly-labeled species tree that minimizes the total rf distance from the input mul-trees. we develop and implement a fast […]


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MulRF institution(s)
Department of Biology, University of Florida, Gainesville, FL, USA; Department of Computer Science, Iowa State University, Ames, IA, USA

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