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Multi-objective Multiple Sequence Alignment M2Align

Online

Permits to solve multiple sequence alignment (MSA) problems by using multi-objective metaheuristics. M2Align is a method based on the jMetal multi-objective framework, which is extended with an encoding for representing MSA solutions. It includes a reimplementation of the MO-SAStrE MSA algorithm with a number of significant improvements, being the most remarkable one the parallel execution of this algorithm.

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M2Align versioning

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M2Align classification

M2Align specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Java
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Java SE Development Kit, Apache Maven, Git, Strike Contacts Generator
Maintained:
Yes

M2Align support

Maintainer

  • Antonio Nebro <>

Credits

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Publications

Institution(s)

Facultad de Ciencias de la Ingenieria, Universidad Tecnica Estatal de Quevedo, Quevedo, Ecuador; Departamento de Lenguajes y Ciencias de la Computacion, Universidad de Malaga, Malaga, Spain

Funding source(s)

Supported by the Secretarıa Nacional de Educacion Superior Ciencia y Tecnolog ıa SENESCYT from Ecuador; and Spanish Grants TIN2014-58304-R (Ministerio de Economıa y Competitividad), P11-TIC-7529 and P12-TIC-1519 (Plan Andaluz I + D + I – Junta de Andalucia).

Link to literature

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