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MultiBreak-SV specifications

Information


Unique identifier OMICS_06139
Name MultiBreak-SV
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Pacific Biosciences
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Publication for MultiBreak-SV

MultiBreak-SV citations

 (2)
library_books

PacBio Sequencing and Its Applications

2015
PMCID: 4678779
PMID: 26542840
DOI: 10.1016/j.gpb.2015.08.002

[…] sequencing technology and provides much longer reads. thus, it is adept at identifying non-snp dna variations, albeit at the cost of higher per-nucleotide error rates. in 2014, a sv detection tool, multibreak-sv, was developed to analyze pacbio sequencing data, paired-end short reads, or hybrid sequencing data . ritz et al. demonstrated that multibreak-sv is able to detect svs with high […]

library_books

A review of study designs and statistical methods for genomic epidemiology studies using next generation sequencing

2015
Front Genet
PMCID: 4403555
PMID: 25941534
DOI: 10.3389/fgene.2015.00149

[…] such as array comparative genomic hybridization (cgh; ). a number of methods have also been developed to call svs from sequencing data, including re-sequencing and de novo assembly methods such as multibreak-sv (), gasv (), lumpy (), delly (), cn.mops (), as well as methods reviewed in , . epigenetic variations are the modifications on dna or chromatin without altering the dna sequence. […]


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MultiBreak-SV institution(s)
Department of Computer Science, Brown University, RI, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine, Mount Sinai, NY, USA; Institute for Genomics and Multiscale Biology, Icahn School of Medicine, Mount Sinai, NY, USA; School of Natural Sciences, University of California, Merced, CA, USA; Pacific Biosciences, Menlo Park, CA, USA; Center for Computational Molecular Biology, Brown University, RI, USA; Department of Computer Science, Brown University, RI, USA; Institute for Genomics and Multiscale Biology, Icahn School of Medicine, Mount Sinai, NY, USA

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