MultiCellDS specifications


Unique identifier OMICS_14020
Name MultiCellDS
Alternative name MultiCellular Data Standard
Restrictions to use None
Data access Application programming interface
Version 1.0
Maintained Yes

Publication for MultiCellular Data Standard

MultiCellDS citations


PhysiCell: An open source physics based cell simulator for 3 D multicellular systems

PLoS Comput Biol
PMCID: 5841829
PMID: 29474446
DOI: 10.1371/journal.pcbi.1005991

[…] PhysiCell is intended to function as a modular engine and to interact with standardized data (e.g., MultiCellDS []), but it has not yet fully implemented MultiCellDS import and export. Graphical simulation design tools, data visualization tools, and analysis tools are needed to widen its accessibili […]


Comparing individual based approaches to modelling the self organization of multicellular tissues

PLoS Comput Biol
PMCID: 5330541
PMID: 28192427
DOI: 10.1371/journal.pcbi.1005387

[…] gress in this area will be accelerated by advances in automating the process of model specification and implementation, for example through extended use of mark-up languages such as SBML, FieldML and MultiCellDS.Here we have made use of a consistent simulation framework, Chaste, within which to compare different classes of cell-based model. A longer-term challenge is to extend such comparison stud […]

MultiCellDS institution(s)
Lawrence J. Ellison Institute for Transformative Medicine, University of Southern California, Los Angeles, CA, USA; Integrated Mathematical Oncology, Moffitt Cancer Center, Tampa, FL, USA; Applied Mathematics, University of Colorado, CO, USA; School of Mathematics & Statistics and Bateson Centre, University of Sheffield, Sheffield, UK; Bioengineering, University of Louisville, Louisville, KY, USA; Cancer Research UK/MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford, UK; Mathematical NeuroOncology, Mayo Clinic, Phoenix, AZ, USA; Institute of Computer Science, University of Leipzig, Leipzig, Germany; Electrical Engineering, University of Southern California, Los Angeles, CA, USA; Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA; Biomodeling and Biosystems Analysis Group, Centrum Wiskunde and Informatics, Amsterdam, Netherlands; Aerospace and Mechanical Engineering, University of Southern California, Los Angeles, CA, USA; Systems Biology Laboratory, Johns Hopkins University, Baltimore, MD, USA; Mathematical Oncology, City of Hope, Duarte, CA, USA; Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA; Applied Mathematics, University of California, Merced, CA, USA; Chemical, Paper, and Biomedical Engineering, Miami University, Oxford, OH, USA; Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA

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