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multiClust specifications

Information


Unique identifier OMICS_17754
Name multiClust
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.2
Stability Stable
Requirements
gplots, graphics, BiocGenerics, Biobase, GEOquery, grDevices, amap, RUnit, knitr, preprocessCore, cluster, survival, mclust, ctc, dendextend
Maintained Yes

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Additional information


a read-only mirror of the Bioconductor SVN repository is available from: https://github.com/Bioconductor-mirror/multiClust/tree/release-3.3

Publication for multiClust

multiClust citation

library_books

APOBEC mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response

2017
PMCID: 5796993
PMID: 29435122
DOI: 10.18632/oncotarget.23344

[…] maftools [] as previously described [] and visualized with oncoplots and forest plots., molecular subtyping of 408 tcga bladder urothelial carcinoma samples with rna-seq data was performed using multiclust v1.4.0 []. samples were classified as luminal, p-53-like, basal, or claudin-low as previously described [] with hierarchical clustering using euclidean distance and ward's linkage method […]


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multiClust institution(s)
Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA; Department of Biomedical Engineering, University of Connecticut, Storrs, CT, USA; Genome Institute of Singapore, ASTAR (Agency for Science, Technology and Research), Singapore; School of Computer Science and Engineering, Nanyang Technological University, Singapore; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
multiClust funding source(s)
This work was supported by The Jackson Laboratory for Genomic Medicine and the University of Connecticut.

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