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MultiLoc specifications

Information


Unique identifier OMICS_01628
Name MultiLoc
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Version 2
Stability Stable
Maintained Yes

Maintainers


  • person_outline Oliver Kohlbacher <>
  • person_outline Torsten Blum <>
  • person_outline Sebastian Briesemeister <>

Additional information


http://abi.inf.uni-tuebingen.de/Services/MultiLoc2/multiloc2_information

Information


Unique identifier OMICS_01628
Name MultiLoc
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2
Stability Stable
Requirements
LIBSVM, BLAST, InterProScan
Maintained Yes

Versioning


Add your version

Maintainers


  • person_outline Oliver Kohlbacher <>
  • person_outline Torsten Blum <>
  • person_outline Sebastian Briesemeister <>

Additional information


http://abi.inf.uni-tuebingen.de/Services/MultiLoc2/multiloc2_information

Publications for MultiLoc

MultiLoc in pipelines

 (6)
2018
PMCID: 5954228
PMID: 29764946
DOI: 10.1128/mBio.00636-18

[…] using iq-tree, based on 29 proteins (longer than 50 aa) encoded by single-copy genes. the go names and subcellular protein locations of the fiscogs were predicted using blast2go v5.0 and the multiloc2 webserver against the fungal high-resolution database, respectively (, )., all four harpellales taxa and corresponding genome information have been deposited in ddbj/ena/genbank […]

2017
PMCID: 5322759
PMID: 28243526
DOI: 10.7717/peerj.2974

[…] was performed with phyre2 (), a web portal for protein modelling, prediction, and analysis (http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index). the sub-cellular localisation was performed by multiloc2 () (https://abi.inf.uni-tuebingen.de/services/multiloc2). transmembrane domains were further investigated and identified using tmpred (), a program based on statistical analysis of tmbase […]

2016
PMCID: 5015942
PMID: 27412987
DOI: 10.1534/g3.116.032961

[…] to biochemical pathways based on matches (blastp v.2.2.28+; e-value ≤ 10−5; ) to the kegg database (release august 27, 2014; ). the subcellular localization of kinases was inferred using the program multiloc2 (release october 26, 2009; ). three-dimensional structures of select kinases were predicted using the program i-tasser v.4.4 (); structures were visualized and superimposed using […]

2015
PMCID: 4491171
PMID: 26108605
DOI: 10.1038/ncomms8344

[…] and tmhmm v.2.0c (http://www.cbs.dtu.dk/services/tmhmm/) and then inferred to be localized to extracellular space and/or lysosomes (sensitivity: >0.5) employing the programme multiloc (http://abi.inf.uni-tuebingen.de/services/multiloc). in the final annotation, predicted proteins were classified according to their conserved interproscan domains and then based […]

2015
PMCID: 4512722
PMID: 26204516
DOI: 10.1371/journal.pone.0133810

[…] pi/mw (http://web.expasy.org/compute_pi/). the signal peptide cleavage site was predicted by signalp program (http://www.cbs.dfu.dk/service/signalp). cellular localization was predicted using multiloc program (http://abi.inf.uni-tuebingen.de/services/multiloc/). glycosylation prediction was performed by netnglyc 1.0 (http://www.cbs.dtu.dk/services/netnglyc/), grape tissues (vitis vinifera […]


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MultiLoc in publications

 (82)
PMCID: 5954228
PMID: 29764946
DOI: 10.1128/mBio.00636-18

[…] using iq-tree, based on 29 proteins (longer than 50 aa) encoded by single-copy genes. the go names and subcellular protein locations of the fiscogs were predicted using blast2go v5.0 and the multiloc2 webserver against the fungal high-resolution database, respectively (, )., all four harpellales taxa and corresponding genome information have been deposited in ddbj/ena/genbank […]

PMCID: 5797552
PMID: 29441087
DOI: 10.3389/fpls.2018.00061

[…] ath1 genome array, including 17 invertase genes and 90 invinh/pmei genes., the following online programs were used to predict the subcellular localizations of invinh1 and invinh2: psort (), multiloc2 (), and yloc (). all three programs were run with the default setting for plant proteins., genevestigator () was used to analyze the expression pattern of invinh1 and invinh2. the data […]

PMCID: 5751367
PMID: 29261107
DOI: 10.3390/ijms18122768

[…] signal peptides were predicted by the signalp 4.1 (http://www.cbs.dtu.dk/services/signalp/, []) server using default parameters. the subcellular localization of each protein was predicted with the multiloc2.0 server (http://abi.inf.uni-tuebingen.de/services/multiloc2/, []) using the predictive method: multiloc2-highres (plant), 10 localization., the chromosomal locations of bngols genes […]

PMCID: 5597180
PMID: 28902917
DOI: 10.1371/journal.pone.0183858

[…] of experimental data, using a number of online programs that included nucpred (http://www.sbc.su.se/~maccallr/nucpred/cgi-bin/single.cgi; []), mitoprot (http://ihg.gsf.de/ihg/mitoprot.html; []), multiloc (http://abi.inf.uni-tuebingen.de/services/multiloc; []), signalp version 4.1 (http://www.cbs.dtu.dk/services/signalp/; []), and wolf psort (http://www.genscript.com/wolf-psort.html.; [])., […]

PMCID: 5578206
PMID: 28829359
DOI: 10.3390/ijms18081820

[…] []; mitoprot ii: http://ihg.gsf.de/ihg/mitoprot.html []; predotar: https://urgi.versailles.inra.fr/predotar/predotar.html []; psort ii: http://psort.hgc.jp/form2.html []; multiloc/targetloc: http://abi.inf.uni-tuebingen.de/services/multiloc/ []; ngloc: http://genome.unmc.edu/ngloc/index.html []; yloc: http://abi.inf.uni-tuebingen.de/services/yloc/webloc.cgi [] […]


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MultiLoc institution(s)
Division for Simulation of Biological Systems, ZBIT/WSI, Eberhard-Karls-Universität Tübingen, Germany

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