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Multilocus sequence typing software tools | De novo genome sequencing data analysis

Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the “gold standard” of typing, but it is traditionally performed in an expensive and…
G T A T C G C T A
Acinetobacter…
Web

Acinetobacter baumannii MLST databases

Comprises forty-eight distinctive alleles of the ampC locus. The platform of…

Comprises forty-eight distinctive alleles of the ampC locus. The platform of Acinetobacter baumannii MLST databases provides an open access to all the data and allows submissions of novel sequences.…

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BIGSdb
Desktop

BIGSdb Bacterial Isolate Genome Sequence Database

Allows storage and analysis of sequence data for bacterial isolates. BIGSdb is…

Allows storage and analysis of sequence data for bacterial isolates. BIGSdb is a software platform developed to host, flexibly organize, and extract allelic variants for any locus of interest. A…

SuperCAT
Dataset

SuperCAT

Compiles and integrates multilocus sequence typing data from all five schemes…

Compiles and integrates multilocus sequence typing data from all five schemes for the B. cereus group often involved in food poisoning incidents. The isolates have been classified thank to the seven…

G T A T C G C T A
PubMLST
Dataset

PubMLST Public MultiLocus Sequence Typing

Hosts multi-locus sequence typing (MLST) data. PubMLST resources are hosted…

Hosts multi-locus sequence typing (MLST) data. PubMLST resources are hosted using the Bacterial Isolate Genome Sequence Database (BIGSdb) platform. A RESTful application programming interface (API)…

G T A T C G C T A
MLST
Web

MLST MultiLocus Sequence Typing

A web-based method for multilocus sequences typing (MLST) of 66 bacterial…

A web-based method for multilocus sequences typing (MLST) of 66 bacterial species based on (whole-genome sequencing) WGS data. The MLST Web server was specifically designed for ease of use, for the…

G T A T C G C T A
ARG-ANNOT
Dataset

ARG-ANNOT Antibiotic Resistance Gene-ANNOTation

Detects existing and putative new antibiotic resistance (AR) genes in bacterial…

Detects existing and putative new antibiotic resistance (AR) genes in bacterial genomes. ARG-ANNOT uses a local BLAST program in Bio-Edit software that allows the user to analyze sequences without a…

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ResFinder
Dataset

ResFinder

Uses whole genome sequencing (WGS) data for identifying acquired antimicrobial…

Uses whole genome sequencing (WGS) data for identifying acquired antimicrobial resistance genes in bacteria. The current version only covers horizontally acquired resistance genes and not resistance…

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