MultiMiTar specifications

Information


Unique identifier OMICS_06683
Name MultiMiTar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_06683
Name MultiMiTar
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for MultiMiTar

MultiMiTar in publications

 (6)
PMCID: 5133438
PMID: 27906131
DOI: 10.1098/rsob.160181

[…] computational approaches for mirna target prediction have already been developed, such as targetscan, miranda, mirmap, diana-microt, targetboost, mitarget, mirtarget2, targetspy, targetminer, multimitar, nbmirtar and microt-ann []. because each algorithm has its own set of limitations, multiple computational algorithms are commonly used simultaneously to predict and identify mirna targets […]

PMCID: 4477080
PMID: 25746225
DOI: 10.1007/s00018-015-1875-5

[…] 0.1 and 1.1 sequence. bioinformatic analyses (rna hybrid in bibiserv: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/; [], pita: http://genie.weizmann.ac.il/pubs/mir07/index.html; [] and multimitar: http://www.isical.ac.in/~bioinfo_miu/multimitar.htm; []) predicted the presence of five highly conserved mre-1270 sites in the ifn-α1 as rna/exons 0.1 and 1.1 (fig. a and listed […]

PMCID: 4304206
PMID: 25559987
DOI: 10.1186/1471-2164-15-S10-S2

[…] rnahybrid[] and miriam[], first maximize the thermodynamic stability of the mirna-mrna pair and then search for sequence complementarities., machine learning algorithms, such as rfmirtarget[] and multimitar[], filter predictions from ab initio algorithms by using classifiers trained with feature patterns extracted from experimentally-validated interactions. rfmirtarget is based on a random […]

PMCID: 4108425
PMID: 25054916
DOI: 10.1371/journal.pone.0103142

[…] . the 3′ utr sequences of mrnas in the above eight species and the homologous genes across species were obtained from ensembl biomart ., in this study, three algorithms, targetscan –, miranda , and multimitar , were used to predict the possible mirna-mrna interactions in eight species independently. these three algorithms use different information on mirna target prediction. targetscan focuses […]

PMCID: 4075517
PMID: 24717361
DOI: 10.4161/rna.28649

[…] which utilizes a database of validated interactions (tarbase and mirrecords) against which it evaluates future predictions. a number of machine-leaning algorithms, such as targetboost, targetspy, multimitar, and nbmirtar have been developed. however, the dependence of machine learning algorithms on the quality of training data set of experimentally verified target genes represents a major […]


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MultiMiTar institution(s)
Machine Intelligence Unit, Indian Statistical Institute, Kolkata, West Bengal, India

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