MultiPhen protocols

MultiPhen computational protocol

MultiPhen specifications


Unique identifier OMICS_04397
Name MultiPhen
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0.2
Stability Stable
MASS, abind, epitools, meta
Maintained No


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Publication for MultiPhen

MultiPhen IN pipeline

PMCID: 4593624
PMID: 26437075
DOI: 10.1371/journal.pone.0139642

[…] (10k, 60k), assigning the case-control status arbitrarily., the simulations and power assessment where done using the computer program r 3.2.1 [44], with the additional packages: matrix [45], multiphen [46] and snpstats [47]., the simulation program can be received from the authors by request., both of the statistical methods keep the type-i error level, with skat being slightly […]

MultiPhen institution(s)
Department of Epidemiology and Biostatistics, Imperial College London, London, UK; Department of Pediatrics, Imperial College London, London, UK; Department of Surgery and Cancer, Imperial College London, London, UK; Translational Research Unit, Chulabhorn Research Institute, Bangkok, Thailand; MRC-HPA Centre for Environment and Health, Imperial College London, London, UK; Institute of Health Sciences, University of Oulu, Oulu, Finland; National Institute of Health and Welfare, Oulu, Finland; Department of Genomics of Common Disease, Imperial College London, London, UK
MultiPhen funding source(s)
Supported by the European Network for Genetic and Genomic Epidemiology Consortium (grant number P12892 DFHM), the National Institute for Health Research (NIHR) Imperial College Health Care NHS Trust Biomedical Research Centre, the European Union (grant HEALTH-2007-201550), the Academy of Finland (project grants 104781, 120315, 129269, 1114194, Center of Excellence in Complex Disease Genetics and SALVE), University Hospital Oulu, Biocenter, University of Oulu, Finland (75617), NHLBI grant 5R01HL087679-02 through the STAMPEED program (1RL1MH083268-01), NIH/NIMH (5R01MH63706:02), ENGAGE project and grant agreement HEALTH-F4-2007-201413, the Medical Research Council, UK (PrevMetSyn/SALVE) and the European Community’s Seventh Framework Programme (grant number 223367, MultiMod).

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