MGRA specifications

Unique identifier:
OMICS_21805
Alternative name:
GRIMM-Synteny
Interface:
Web user interface
Input data:
A set of genomes represented as sequences of genes or synteny blocks.
Output data:
Ancestral genomes at the internal nodes of the phylogenetic tree, a most plausible phylogenetic tree based on the rearrangement characters.
Version:
2
Source code URL:
https://codeload.github.com/compbiol/mgra/zip/master
Name:
Multiple Genome Rearrangements and Ancestors
Software type:
Application/Script
Restrictions to use:
None
Input format:
GRIMM,INFERCARS
Computer skills:
Basic
Stability:
Stable
Maintained:
Yes
  • Animals
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus

MGRA specifications

Unique identifier:
OMICS_21805
Alternative name:
GRIMM-Synteny
Interface:
Command line interface
Input data:
A set of genomes represented as sequences of genes or synteny blocks.
Output data:
Ancestral genomes at the internal nodes of the phylogenetic tree, a most plausible phylogenetic tree based on the rearrangement characters.
Computer skills:
Advanced
Stability:
Beta
Name:
Multiple Genome Rearrangements and Ancestors
Software type:
Application/Script
Restrictions to use:
None
Input format:
GRIMM,INFERCARS
License:
GNU General Public License version 2.0
Version:
2.3.0
Maintained:
Yes
  • Animals
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus

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MGRA distribution

download

MGRA support

Documentation

Maintainers

  • Pavel Pevzner <>
  • Max Alekseyev <>
  • Pavel Pevzner <>
  • Max Alekseyev <>

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Publications

Institution(s)

Computational Biology Institute & Department of Mathematics, The George Washington University, Washington DC, USA; Department of Computer Science and Engineering, University of South Carolina, Columbia, SC, USA; Department of Higher Mathematics, ITMO University, St. Petersburg, Russia

Funding source(s)

Supported by the National Science Foundation under the grant No. IIS- 1462107.

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