MultiRes statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MultiRes
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Tool usage distribution map

This map represents all the scientific publications referring to MultiRes per scientific context
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Protocols

MultiRes specifications

Information


Unique identifier OMICS_19698
Name MultiRes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The sampled reads, the classifier EC, an ordered array and a threshold parameter.
Output data It outputs for every k-mer observed in the sampled reads a status: whether the k-mer is erroneous or a rare variant.
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.2
Stability Stable
Source code URL https://codeload.github.com/raunaq-m/MultiRes/tar.gz/v0.2
Maintained Yes

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  • person_outline raunaqm

Publication for MultiRes

MultiRes citation

call_split

Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction

2016
BMC Bioinformatics
PMCID: 5123302
PMID: 28185565
DOI: 10.1186/s12859-016-1262-8
call_split See protocol

[…] h weights defined by the status of their phylogenetic conservation [], while ensuring that (ii) the number of copies of each gene in the order is upper bounded by a precomputed ancestral copy number. MULTIRES is presented as a heuristic that aims to achieve both.The outline of MULTIRES is presented as a flowchart in Fig. . We first infer an ancestral order for the synteny blocks. We use ANGES [] t […]


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MultiRes institution(s)
The School of Electrical Engineering and Computer Science, USA; Department of Biology, The Pennsylvania State University, University Park, PA, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
MultiRes funding source(s)
Supported by the National Science Foundation (NSF) Award #1421908.

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