MultiRes statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MultiRes

Tool usage distribution map

This map represents all the scientific publications referring to MultiRes per scientific context
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MultiRes specifications


Unique identifier OMICS_19698
Name MultiRes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The sampled reads, the classifier EC, an ordered array and a threshold parameter.
Output data It outputs for every k-mer observed in the sampled reads a status: whether the k-mer is erroneous or a rare variant.
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.2
Stability Stable
Source code URL
Maintained Yes




No version available


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Publication for MultiRes

MultiRes citation


Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction

BMC Bioinformatics
PMCID: 5123302
PMID: 28185565
DOI: 10.1186/s12859-016-1262-8
call_split See protocol

[…] h weights defined by the status of their phylogenetic conservation [], while ensuring that (ii) the number of copies of each gene in the order is upper bounded by a precomputed ancestral copy number. MULTIRES is presented as a heuristic that aims to achieve both.The outline of MULTIRES is presented as a flowchart in Fig. . We first infer an ancestral order for the synteny blocks. We use ANGES [] t […]

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MultiRes institution(s)
The School of Electrical Engineering and Computer Science, USA; Department of Biology, The Pennsylvania State University, University Park, PA, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
MultiRes funding source(s)
Supported by the National Science Foundation (NSF) Award #1421908.

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