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MultiRes specifications

Information


Unique identifier OMICS_19698
Name MultiRes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The sampled reads, the classifier EC, an ordered array and a threshold parameter.
Output data It outputs for every k-mer observed in the sampled reads a status: whether the k-mer is erroneous or a rare variant.
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.2
Stability Stable
Source code URL https://codeload.github.com/raunaq-m/MultiRes/tar.gz/v0.2
Maintained Yes

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  • person_outline raunaqm <>

Publication for MultiRes

MultiRes in publications

 (2)
PMCID: 5389385
PMID: 28446912
DOI: 10.3389/fpls.2017.00484

[…] could be construed as a potential conflict of interest., funding. the study was supported by innovation fond denmark, ministry of higher education and science, rustfight (grant number 11-116241) and multires (grant number 4105-00022b), and a grant from aarhus university, denmark., the authors would like to thank dr. lesley boyd, national institute of agricultural botany, cambridge, uk, […]

PMCID: 5123302
PMID: 28185565
DOI: 10.1186/s12859-016-1262-8

[…] encountered when reconstructing mammalian genomes at the synteny-block level, although the relative positions of genes in such reconstruction cannot be recovered., we propose a new heuristic method, multires, to reconstruct ancestral gene orders with duplications guided by homologous synteny blocks for a set of related descendant genomes. the method uses a synteny-level reconstruction to break […]


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MultiRes institution(s)
The School of Electrical Engineering and Computer Science, USA; Department of Biology, The Pennsylvania State University, University Park, PA, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
MultiRes funding source(s)
Supported by the National Science Foundation (NSF) Award #1421908.

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