rMATS specifications

Unique identifier:
OMICS_01336
Alternative name:
MATS
Interface:
Command line interface
Input format:
(FASTQ, BAM) + GTF
Output format:
TXT
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
replicate Multivariate Analysis of Transcript Splicing
Software type:
Application/Script
Restrictions to use:
None
Output data:
Alternative Splicing events sorted by P-values in ascending order
Operating system:
Unix/Linux, Mac OS
Version:
3.2.5
Requirements:
STAR, Samtools, Numpy, Scipy, Pysam

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rMATS distribution

download

rMATS support

Documentation

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Publications

Institution(s)

Departments of Microbiology, Immunology, and Molecular Genetics and Departments of Molecular Physiology and Biophysics and Pathology, University of Iowa, Iowa City, IA, USA; Statistics, University of California, Los Angeles, CA, USA; Departments of Microbiology, Immunology, & Molecular Genetics, USA

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