rMATS specifications

Information


Unique identifier OMICS_01336
Name rMATS
Alternative name replicate Multivariate Analysis of Transcript Splicing
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format (FASTQ, BAM) + GTF
Output data Alternative Splicing events sorted by P-values in ascending order
Output format TXT
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Version 3.2.5
Stability Stable
Requirements STAR, Samtools, Numpy, Scipy, Pysam
Maintained Yes

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rMATS articles

rMATS citation

2017
PMCID: 5702118

[…] method was used to construct and identify both known and novel transcripts from tophat alignment results [40]. alternative splicing (as) events were classified to five major types by the software rmats (multivariate analysis of transcript splicing) v3.2.5 [41]. the number of as events in each sample was estimated separately. because the chicken genome has been recently updated [42], […]

rMATS institution(s)
Departments of Microbiology, Immunology, and Molecular Genetics and Departments of Molecular Physiology and Biophysics and Pathology, University of Iowa, Iowa City, IA, USA; Statistics, University of California, Los Angeles, CA, USA; Departments of Microbiology, Immunology, & Molecular Genetics, USA

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