MULTOVL statistics

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MULTOVL specifications

Information


Unique identifier OMICS_23171
Name MULTOVL
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format BED,GFF,BAM
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.3.5
Stability Stable
Requirements
cmake, a C++ compiler, Boost libraries
Maintained No

Subtools


  • MULTOVLPROB
  • PARMULTOVLPROB
  • PGMULTOVL

Versioning


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Maintainer


This tool is not available anymore.

Additional information


https://sourceforge.net/projects/multovl/

Publication for MULTOVL

MULTOVL in publications

 (5)
PMCID: 5472177
PMID: 28593990
DOI: 10.1038/ncomms15456

[…] peak, it was not assigned to any gene. the binding sites and differential enriched regions in h3k27ac and h3k4me1/2 are shown in , respectively. peak overlapping and merging were done with multovl (v1.2). chip-seq read counts were normalized to reads per kilobase per million reads and combined into one matrix with deeptools (http://deeptools.ie-freiburg.mpg.de/) for heatmap […]

PMCID: 4925024
PMID: 27261530
DOI: 10.1084/jem.20152002

[…] parameters, a genome size of 2,654,911,517 bp (mm9), and a mature b cell input sample (14,951). second, the overlap of the called double- and single-cross-linked peaks was determined with the multovl program () by using a minimal overlap length of one and allowing for all possible overlaps, with the results being parsed and converted to tables with custom-made bash, perl, and r scripts. […]

PMCID: 4801952
PMID: 26903600
DOI: 10.15252/embj.201592532

[…] ) against human genome assembly grch37/hg19, allowing for two mismatches and outputting only uniquely aligned reads (parameters: ‐v 2 –best –strata –tryhard ‐m 1). common sites were identified using multovl (aszodi, ) after identifying peaks with model‐based analysis of chip‐seq (macs) (zhang et al, )., brdu‐positive genomic regions and sororin peaks were called using the r package bayespeak […]

PMCID: 4287485
PMID: 25569172
DOI: 10.1371/journal.pgen.1004920

[…] space covered by a (d)mr could be assigned to different classes of elements, while each basepair of the (d)mr could be assigned to only one class., we tested for significant overlap of dmrs using multovl version 1.2 (campus science support facilities gmbh (csf), vienna, austria). we reduced the genome space to the basepair space covered by mrs identified in at least one hpg1 accession. dmrs […]

PMCID: 4042683
PMID: 24917883
DOI: 10.3389/fgene.2014.00163

[…] hall, ). the enrichment of the gene ontology (go) in the sv regions was examined using the fisher's exact test (with fdr correction <0.05) in blast2go (conesa et al., ; gotz et al., ). we used multovl version 1.2.98 with default parameters to check whether svs overlaps across different species (aszodi, )., the origin of the genetic variation (e.g., snps, indels, inversions, and deletions) […]


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MULTOVL institution(s)
Scientific Computing Core Facility, Campus Science Support Facilities, Vienna, Austria
MULTOVL funding source(s)
Supported, in part, by the Austrian Genome Research Programme of The Ministry for Science and Research (BMWF), contract no 820980 (EpigeneticControl).

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