MULTOVL specifications

Information


Unique identifier OMICS_23171
Name MULTOVL
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format BED,GFF,BAM
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.3.5
Stability Stable
Requirements
cmake, a C++ compiler, Boost libraries
Maintained No

Subtools


  • MULTOVLPROB
  • PARMULTOVLPROB
  • PGMULTOVL

Versioning


No version available

Maintainer


This tool is not available anymore.

Additional information


https://sourceforge.net/projects/multovl/

Publication for MULTOVL

MULTOVL citations

 (2)
library_books

Loss of Asxl2 leads to myeloid malignancies in mice

2017
Nat Commun
PMCID: 5472177
PMID: 28593990
DOI: 10.1038/ncomms15456

[…] intergenic peak, it was not assigned to any gene. The binding sites and differential enriched regions in H3K27ac and H3K4me1/2 are shown in , respectively. Peak overlapping and merging were done with multovl (v1.2). ChIP-seq read counts were normalized to reads per kilobase per million reads and combined into one matrix with deeptools (http://deeptools.ie-freiburg.mpg.de/) for heatmap visualizatio […]

library_books

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes

2014
Front Genet
PMCID: 4042683
PMID: 24917883
DOI: 10.3389/fgene.2014.00163

[…] an and Hall, ). The enrichment of the gene ontology (GO) in the SV regions was examined using the Fisher's exact test (with FDR correction <0.05) in Blast2GO (Conesa et al., ; Gotz et al., ). We used Multovl version 1.2.98 with default parameters to check whether SVs overlaps across different species (Aszodi, ). […]

MULTOVL institution(s)
Scientific Computing Core Facility, Campus Science Support Facilities, Vienna, Austria
MULTOVL funding source(s)
Supported, in part, by the Austrian Genome Research Programme of The Ministry for Science and Research (BMWF), contract no 820980 (EpigeneticControl).

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