MuPIT interactive statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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MuPIT interactive specifications

Information


Unique identifier OMICS_07971
Name MuPIT interactive
Alternative name Mutation position imaging toolbox interactive
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Rachel Karchin <>

Publication for Mutation position imaging toolbox interactive

MuPIT interactive in publications

 (3)
PMCID: 5362418
PMID: 28147343
DOI: 10.18632/oncotarget.14895

[…] from firehose. oncodriveclust and oncodrivefm analyses were generated on the intogen mutations 2.4.1 platform []., visualization of mutated residues on the protein 3d structure was generated in mupit interactive []. mechismo was used to predict the functional impact of residue changes on protein and rna interactions and transfic was used to estimate the functional impact of mutations [, ]., […]

PMCID: 4759233
PMID: 26701185
DOI: 10.1007/s00251-015-0892-8

[…] phylogenetic haplotype networks were constructed based on snps within the tlrs using network 4.6.1.1 (www.fluxus-technology.com). only haplotypes present in a minimum of two animals were considered. mupit interactive (niknafs et al. ) was used to map variants under selection on to three-dimensional (3d) protein structures. swiss prot and ensemble genome browsers were utilized to determine […]

PMCID: 4404360
PMID: 25894218
DOI: 10.1371/journal.pone.0124069

[…] study were compared to human tlr swiss-prot database to determine their possible link to function. sites under positive selection were also mapped to three dimensional (3d) protein structures using mupit interactive [] in order to examine their functional significance. we also determined the conservative or radical nature of amino acid changes at sites under positive selection within […]


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MuPIT interactive institution(s)
Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA; In Silico Solutions, Fairfax, VA, USA; Center for Biological Science and Engineering, University of California, Santa Cruz, CA, USA; Institute of Medical Genetics, School of Medcine, Cardiff University, Heath Park, Cardiff, UK
MuPIT interactive funding source(s)
Supported by National Institutes of Health CA 152432, 3U24CA143858-2S1, National Science Foundation DBI 0845275.

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