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Murasaki specifications

Information


Unique identifier OMICS_11714
Name Murasaki
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Boost, zlib
Maintained Yes

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  • person_outline Yasubumi Sakakibara

Publication for Murasaki

Murasaki citations

 (28)
library_books

Complete Genome Sequence of Microcystis aeruginosa NIES 2481 and Common Genomic Features of Group G M. aeruginosa

2018
J Genomics
PMCID: 5865083
PMID: 29576807
DOI: 10.7150/jgen.24935

[…] SPR) loci were detected by using CRISPRFinder . Functional annotation based on cluster of orthologous groups (COG) categories was conducted by using COGNIZER . Synteny analysis was performed by using MURASAKI . […]

library_books

Adiponectin deficiency induced diabetes increases TNFα and FFA via downregulation of PPARα

2018
PMCID: 5938197
PMID: 29445073
DOI: 10.1292/jvms.17-0641

[…] se in concentrations of TNFα and FFA via downregulation of PPARα. In future, we will clarify which in PPARα and AMPK is important because we have already developed PPARα knockout mice.We thank Haruna MURASAKI for technical help with animal experiments. […]

library_books

Spatial patterns of the frog Oophaga pumilio in a plantation system are consistent with conspecific attraction

2018
Ecol Evol
PMCID: 5838034
PMID: 29531702
DOI: 10.1002/ece3.3748

[…] me‐range size of females is larger than that of males (Donnelly, ; Pröhl & Hödl, ; Savage, ), is independent of density (Donnelly, ), and may, in part, provide females access to bromeliads and mates (Murasaki, ). The species’ mating system has been described as sequential polygamy comprising sequential and simultaneous polygyny and sequential polyandry (Pröhl & Hödl, ). […]

library_books

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

2017
PLoS Biol
PMCID: 5531438
PMID: 28749982
DOI: 10.1371/journal.pbio.2002266

[…] For comparison with R. varieornatus, we first aligned the genomes of H. dujardini and R. varieornatus with Murasaki and visualized with gmv []. The lower tf-idf anchor filter was set to 500. A syntenic block was observed between scaffold0001 of H. dujardini and scaffold002 of R. varieornatus. We extracted […]

library_books

Safety of heparin bridging therapy for transrectal ultrasound guided prostate biopsy in patients requiring temporary discontinuation of antithrombotic agents

2016
Springerplus
PMCID: 5097055
PMID: 27867824
DOI: 10.1186/s40064-016-3610-6

[…] isk patients (e.g., those with atrial fibrillation with mechanical valves, valvular heart disease, and/or a history of cerebrovascular accidents, and those who experience transient ischemic attacks) (Murasaki ). A recent prospective study suggested that heparin bridging therapy increased the risk of bleeding complications from interruption alone (0.8%) to bridging (13%) in colonoscopy and oral and […]

library_books

Impact of Blood Pressure Control on Thromboembolism and Major Hemorrhage in Patients With Nonvalvular Atrial Fibrillation: A Subanalysis of the J‐RHYTHM Registry

2016
PMCID: 5079049
PMID: 27620886
DOI: 10.1161/JAHA.116.004075

[…] K. Sagara, T. Satoh, E. Kodani, K. Sugi, Y. Kobayashi, Y. Higashi, T. Katoh, Y. Hirayama, N. Matsumoto, M. Takano, T. Ikeda, S. Yusu, S. Niwano, Y. Nakazato, Y. Kawano, M. Sumiyoshi, N. Hagiwara, K. Murasaki, H. Mitamura, S. Nakagawa, K. Okishige, K. Azegami, H. Aoyagi, K. Sugiyama, M. Nishizaki, N. Yamawake, I. Watanabe, K. Ohkubo, H. Sakurada, S. Fukamizu, M. Suzuki, W. Nagahori, T. Nakamura, Y […]


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Murasaki institution(s)
Department of Biosciences and Informatics, Keio University, Yokohama, Japan; Department of Computer and Informatics Science, Seikei University, Musashino-shi, Tokyo, Japan
Murasaki funding source(s)
This work was supported in part by a grant-in-aid for scientific research on the priority area “Comparative Genomics” (No.17018029) from the Ministry of Education, Culture, Sports, Science, and Technology Japan, the Takeda Science Foundation, and by Keio University.

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