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Murasaki specifications

Information


Unique identifier OMICS_11714
Name Murasaki
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Boost, zlib
Maintained Yes

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  • person_outline Yasubumi Sakakibara <>

Publication for Murasaki

Murasaki in publications

 (31)
PMCID: 5865083
PMID: 29576807
DOI: 10.7150/jgen.24935

[…] loci were detected by using crisprfinder . functional annotation based on cluster of orthologous groups (cog) categories was conducted by using cognizer . synteny analysis was performed by using murasaki ., we first determined the complete genome sequence of microcystis aeruginosa nies-2481 (table ). the genome consists of a 4.29-mbp circular chromosome (figure ) and a 147,539-bp plasmid […]

PMCID: 5838034
PMID: 29531702
DOI: 10.1002/ece3.3748

[…] size of females is larger than that of males (donnelly, ; pröhl & hödl, ; savage, ), is independent of density (donnelly, ), and may, in part, provide females access to bromeliads and mates (murasaki, ). the species’ mating system has been described as sequential polygamy comprising sequential and simultaneous polygyny and sequential polyandry (pröhl & hödl, )., the study site […]

PMCID: 5531438
PMID: 28749982
DOI: 10.1371/journal.pbio.2002266

[…] h. dujardini, largely explained by an increase in the repeat content (28.6 mb in h. dujardini versus 11.1 mb in r. varieornatus)., whole genome alignments of r. varieornatus and h. dujardini using murasaki [] revealed a low level of synteny but evidence for conserved linkage at the genome scale, with little conservation of gene order beyond a few loci. for example, comparison of r. […]

PMCID: 5479335
PMID: 28690373
DOI: 10.1080/0969725X.2017.1286090

[…] in their gender politics., biographical novels about women artists have been experiencing a veritable boom in recent years. since the turn of the millennium, the lives of frida kahlo, sylvia plath, murasaki shikibu, artemisia gentileschi, marilyn monroe, jane austen, gwen john – to name just a few – have been made subjects of imaginative re-tellings, some of them in multiple versions. […]


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Murasaki institution(s)
Department of Biosciences and Informatics, Keio University, Yokohama, Japan; Department of Computer and Informatics Science, Seikei University, Musashino-shi, Tokyo, Japan
Murasaki funding source(s)
This work was supported in part by a grant-in-aid for scientific research on the priority area “Comparative Genomics” (No.17018029) from the Ministry of Education, Culture, Sports, Science, and Technology Japan, the Takeda Science Foundation, and by Keio University.

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