MuSiC protocols

MuSiC specifications

Information


Unique identifier OMICS_00152
Name MuSiC
Alternative name Mutational Significance In Cancer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Publication for Mutational Significance In Cancer

MuSiC IN pipeline

2015
PMCID: 4580363
PMID: 26395002
DOI: 10.1186/s13073-015-0219-2

[…] single-nucleotide mutations were analyzed using polyphen2 [39] in order to predict their impact on the protein function. to identify significantly mutated genes, the smg test in the genome music (mutational significance in cancer) suite was used with default parameters [40]. microindels were detected using gatk indelgenotyperv2. for further analysis we only considered microindels […]

MuSiC institution(s)
The Genome Institute, Washington University, St Louis, MO, USA

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