Musite statistics

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Musite specifications

Information


Unique identifier OMICS_05941
Name Musite
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.0.1
Stability Stable
Requirements
JRE
Registration required Yes
Maintained Yes

Versioning


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Additional information


http://musite.sourceforge.net/

Information


Unique identifier OMICS_05941
Name Musite
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


http://musite.sourceforge.net/

Publication for Musite

Musite in publications

 (17)
PMCID: 5877738
PMID: 29547512
DOI: 10.3390/ijms19030877

[…] phosphorylation sites were predicted by phosphat v4.0 (available online: http://phosphat.uni-hohenheim.de/; []), netphos v2.0, available online: (http://www.cbs.dtu.dk/services/netphos-2.0/; []) and musite v1.0 (available online: www.musite.net; []). methylation sites were predicted by pmes (available online: http://bioinfo.ncu.edu.cn/inquiries_pmes.aspx; []). the data were compared […]

PMCID: 5471321
PMID: 28663755
DOI: 10.3389/fpls.2017.01042

[…] , http://www.medicagohapmap.org/tools/blastform , http://mafft.cbrc.jp/alignment/server , http://mtgea.noble.org , http://blast.ncbi.nlm.nih.gov , http://mtgea.noble.org , http://musite.net , http://bioinfo.ncu.edu.cn/ubiprober.aspx , the supplementary material for this article can be found online at: […]

PMCID: 5410141
PMID: 28462053
DOI: 10.7717/peerj.3261

[…] occur at specific yet conserved motif in the target protein (; ; ). for example, to predict phosphorylation sites, a number of local sequence based tools have been developed, such as gps 2.0 (), musite (), phosphosvm (), netphos () and kinasephos 2.0 (). besides phosphorylation, much effort also has been contributed to developing bioinformatics tools to identify other ptm sites. developed […]

PMCID: 5133618
PMID: 27910910
DOI: 10.1038/srep38260

[…] on the nature of the n-terminal domains or ring-h2 motif., given that atl protein activity can be regulated by phosphorylation, we also evaluated the presence of putative phosphorylation sites using musite. we thus identified at least one putative phosphorylation site in 69 of the 96 candidates, with a maximum of 16 putative phosphorylation sites identified in vviatl100 (). the putative […]

PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] sumoylation as predicted by 20 different software programs. the software used to predict phosphorylation were netphosk 1.0 [], netphos 2.0 [], kinasephos 2.0 [], diphos [], phosphosvm [], scansite, musite [], and ppsp []. acetylation sites were predicted using pail [], aseb [], brabsb-phka [], lysacet [], and lacep []. methylation sites were predicted using bpb-ppms [] and masa []. […]


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Musite institution(s)
Departments of Computer Science and Biochemistry University of Missouri, MO, Columbia, USA; C. S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA; Center for Computational Biology and Bioinformatics, Indiana University Schools of Medicine and Informatics, Indianapolis, IN, USA
Musite funding source(s)
Supported by National Institutes of Health Grant R21/R33 GM078601, and by National Science Foundation-Plant Genome Research Program Grant DBI-0604439.

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