MutAid specifications

Information


Unique identifier OMICS_12003
Name MutAid
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A target file, a MutAidOptions file and sequencing reads and and optionnaly an adapter-primer file.
Input format AB1,SCF,FASTQ,SFF,FASTA,QUAL,VCF,SAM,BAM
Output data A variant summary table, a QC report, a VCF file per patient, an indexed BAM file per patient and a Sanger encoded FASTQ file per patient.
Output format FASTQ,VCF,HTML,BAI,TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Perl, R
Computer skills Advanced
Stability Stable
Requirements BioPython
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Ram Viy Pandey <>

Additional information


https://sourceforge.net/p/mutaid/wiki/MutAid_Manual/

Publication for MutAid

MutAid institution(s)
AIT Austrian Institute of Technology, Health and Environment Department, Molecular Diagnostics, Vienna, Austria; Institut für Populationsgenetik, Vetmeduni Vienna, Vienna, Austria

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