Mutascope statistics
Protocols
Mutascope specifications
Information
Unique identifier | OMICS_02074 |
---|---|
Name | Mutascope |
Software type | Pipeline/Workflow |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux |
Computer skills | Advanced |
Version | 1.0.2 |
Stability | Stable |
Maintained | Yes |
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Documentation
- Documentation: https://sourceforge.net/p/mutascope/wiki/Home/
Maintainer
- person_outline Olivier Harismendy <>
Publication for Mutascope
Mutascope in pipelines
(2)[…] (celemics, seoul, korea). subsequently, each product was indexed, mixed, and deeply sequenced on hiseq2500. raw data was deindexed and mapped to the reference human genome (hg19) using novoalign. mutascope was used to call somatic mutations, and compared to the whole exome sequencing data []. only the loci with at least 500 reads of both normal and tumor tissue and >5% allelic fraction […]
[…] them using illumina miseq sequencer for 2x150 bp reads. the sequencing reads were then aligned and mutation called using the illumina basespace cloud with truseq dna amplicon application or using mutascope locally []. to increase the detection sensitivity the reads spanning the expected 42 nt deletion in aa2476t tumor were aligned independently using blat []. to analyze the large deletion […]
Mutascope in publications
(3)Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer
[…] and the following run set up: read 1: 301 cycles; read 2: 8 cycles; read 3: 8 cycles; read 4: 301 cycles., fastq files were retrieved from illumina basespace (https://basespace.illumina.com/). mutascope was used to process reads and to prepare them for variant calling because it is a high-sensitivity software suite designed to analyze data derived from high-throughput sequencing of pcr […]
Tumor evolution and intratumor heterogeneity of an epithelial ovarian cancer investigated using next generation sequencing
[…] (celemics, seoul, korea). subsequently, each product was indexed, mixed, and deeply sequenced on hiseq2500. raw data was deindexed and mapped to the reference human genome (hg19) using novoalign. mutascope was used to call somatic mutations, and compared to the whole exome sequencing data []. only the loci with at least 500 reads of both normal and tumor tissue and >5% allelic fraction […]
Postzygotic single nucleotide mosaicisms in whole genome sequences of clinically unremarkable individuals
[…] at genome scale. existing algorithms for identifying psnms from whole-genome or targeted resequencing data require a matched control sample, such as jointsnvmix, varscan 2, strelka, ebcall, mutect, mutascope, and lofreq. as a result, fundamental patterns of the psnms in whole genomes of clinically unremarkable individuals remain largely unknown, such as the prevalence, allele fractions, […]
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