Mutascope protocols

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description
Mutascope computational protocol

Mutascope specifications

Information


Unique identifier OMICS_02074
Name Mutascope
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Olivier Harismendy <>

Publication for Mutascope

Mutascope IN pipeline

2015
PMCID: 4422481
PMID: 25889843
DOI: 10.1186/s12967-015-0485-1

[…] them using illumina miseq sequencer for 2x150 bp reads. the sequencing reads were then aligned and mutation called using the illumina basespace cloud with truseq dna amplicon application or using mutascope locally [23]. to increase the detection sensitivity the reads spanning the expected 42 nt deletion in aa2476t tumor were aligned independently using blat [24]. to analyze the large deletion […]

Mutascope institution(s)
Bioinformatics Graduate Program, University of California San Diego, La Jolla, CA, USA; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA; Rady Children’s Hospital, University of California San Diego, La Jolla, CA, USA; Moores UCSD Cancer Center, University of California San Diego, La Jolla, CA, USA; Department of Medicine, University of California San Diego, La Jolla, CA, USA; Clinical and Translational Research Institute, University of California San Diego, La Jolla, CA, USA; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA
Mutascope funding source(s)
Supported by National Cancer Institute (1R21CA155615-01A1 and 1R21CA152613-01); NCATS (UL1RR031980); a pilot award from the NIH Center of Excellence Grant to the San Diego Center for Systems Biology (P50GM085764).

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