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Associated diseases

Associated diseases

Mutationassessor specifications

Information


Unique identifier OMICS_00134
Name Mutationassessor
Alternative name Mutation Assessor
Interface Web user interface, Application programming interface
Restrictions to use None
Input data A list of mutations.
Output data Some annotations corresponding to the inputted variant.
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline MutationAssessor Team <>

Additional information


http://mutationassessor.org/r3/about.php http://mutationassessor.org/r3/howitworks.php http://mutationassessor.org/r3/webapi.php

Publications for Mutationassessor

Mutationassessor in publications

 (77)
PMCID: 5826295
PMID: 29503567
DOI: 10.2147/OTT.S156998

[…] tolerant (sift; http://sift.bii.a-star.edu.sg/), polyphen-2 (pph2; http://genetics.bwh.harvard.edu/pph2/), fathmm (http://fathmm.biocompute.org.uk/cancer.html), and mutation-assessor (ma; http://mutationassessor.org/r3/howitworks.php).– as the condel scores consist of a weighted average of the scores of ma and fathmm, the condel scores were used to represent an integrated score for ma […]

PMCID: 5799157
PMID: 29423277
DOI: 10.1038/s41525-018-0044-9

[…] used six conservation scores (gerp++, phastcons100way-vertebrate, phastcons20way-mammalian, phylop100way-vertebrate, phylop20way-mammalian and siphy), nine functional prediction scores (fathmm, lrt, mutationassessor, mutationtaster, polyphen2-hdiv, polyphen2-hvar, provean, sift and vest3), six general prediction scores (cadd, dann, eigen-pc, fathmm-mkl, fitcons-i6 and genocanyon) and three […]

PMCID: 5749718
PMID: 29293570
DOI: 10.1371/journal.pone.0189366

[…] package (https://cran.r-project.org/web/packages/metafor/index.html)., a total of 7 in silico tools were applied for functional prediction of lepr q223r and k109r: (1) mutation assessor [] (http://mutationassessor.org), (2) blosum62 [] (https://www.ncbi.nlm.nih.gov/class/fieldguide/blosum62.txt), (3) provean [] (http://provean.jcvi.org/index.php), (4) polyphen-2 [] […]

PMCID: 5760196
PMID: 29261847
DOI: 10.1167/iovs.17-22819

[…] and evolutionary analysis of two missense variants using several publicly available bioinformatic tools: provean (protein variation effect analyzer), polyphen-2 (polymorphism phenotyping v.2), mutationassessor, panther, fathmm, align gvgd, mutpred, and mutation taster. although some of these tools have predicted both mutations to have moderate pathogenic potential, others found […]

PMCID: 5701248
PMID: 29176703
DOI: 10.1038/s41467-017-01877-7

[…] variants and regions from chromosomes x and y were removed from the data using standard approaches. for detailed analysis to identify nsd1 missense variants as deleterious or benign, we used the mutationassessor/functional impact score (fis), polyphen, and a grantham score available through seattleseq annotation server (http://snp.gs.washington.edu/seattleseqannotation138/). mutationmapper […]

Mutationassessor institution(s)
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, NY, USA

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