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Associated diseases

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MuteXt specifications

Information


Unique identifier OMICS_09114
Name MuteXt
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MuteXt

MuteXt in publications

 (7)
PMCID: 5948601
PMID: 29596302
DOI: 10.3390/s18041016

[…] ded sd:[email protected]∧b1∧!b2, besides the replacements in sd, additional constraints are inserted to ensure that the assignments of boolean variables are consistent with enumeration variables. the first one is mutext constraint, as (11), which ensures that any two boolean variables encoding the same multi-valued variable will not be true at the same time. (11)mutext:!([email protected][email protected]), the second one is the compl […]

PMCID: 5386274
PMID: 28394945
DOI: 10.1371/journal.pone.0174992

[…] 3,782 drug-naïve integrase sequences from the lanlsd (downloaded on march 31st, 2015) were added to the in dataset. inclusion criteria for the sequences were as follows. (1) alignment with the mutext software (http://www.schuelter-gm.de/mutext.html) must not have produced an error due to low sequence similarity to the reference sequence (2) at most 10% of the residues of the considered […]

PMCID: 3465209
PMID: 23046792
DOI: 10.1186/2041-1480-3-S3-S2

[…] the underlying linguistic structures that express these semantic relationships., a number of related works have been published with a focus on the extraction of point mutations [-]. mema [] and mutext [] use word distance to select among multiple protein-residue pairs extracted out of a text. mutation-grab [] addresses the ambiguity of protein-residue pairs using a weighted graph made […]

PMCID: 3395893
PMID: 22759648
DOI: 10.1186/1471-2164-13-S4-S10

[…] within an abstract. the performance of the system is evaluated on a set of 100 abstracts. the reported recall and precision for the mutation detection task are >67% and >96%, respectively., mutext [] searches for mutation data using a pattern matching approach and further validates the extracted point mutations using two plausibility filters: a sequence filter and distance filter. […]

PMCID: 3005927
PMID: 21143808
DOI: 10.1186/1471-2164-11-S4-S24

[…] systems target the extraction of mutation mentions from the biomedical literature to permit the reuse of knowledge about mutation impacts. these include work by rebholz-schuhmann et al. [], mutext by [] and mutation miner by []. the mutationfinder system [] extended the rules of mutext for point mutation extraction. the mstrap system created by [] is developed to extract mutations, […]


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MuteXt institution(s)
Department of Cellular and Molecular Pharmacology; Department of Biochemistry and Biophysics, University of California of San Francisco, Genentech Hall, San Francisco, CA, USA

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