mvGST specifications

Information


Unique identifier OMICS_19470
Name mvGST
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.13.0
Stability Stable
Requirements
R(>=2.10.0), AnnotationDbi, GO.db, org.Hs.eg.db, annotate, GOstats, graph, Rgraphviz, topGO, stringr, hgu133plus2.db, gProfileR
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Additional information


https://mirrors.ustc.edu.cn/bioc/packages/3.4/bioc/vignettes/mvGST/inst/doc/mvGST.pdf

mvGST citation

library_books

A shortcut for multiple testing on the directed acyclic graph of gene ontology

2014
BMC Bioinformatics
PMCID: 4232707
PMID: 25366961
DOI: 10.1186/s12859-014-0349-3

[…] 87 BP GO Terms containing at least 5 of the 12,625 Entrez IDs from the single gene (DESeq) analysis were calculated using Stouffer’s Method [,]. The R code [] for Stouffer’s Method is included in the mvGST package [,]; see also Additional file . Briefly, Stouffer’s method transforms each of the P-values (from the single gene analysis) corresponding to an individual gene in the gene set to a standa […]

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