MView statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool MView
info

Tool usage distribution map

This map represents all the scientific publications referring to MView per scientific context
info info

Associated diseases

This word cloud represents MView usage per disease context
info

Popular tool citations

chevron_left Sequence alignment visualization Amino acid sequence alignment viewers chevron_right
Want to access the full stats & trends on this tool?

Protocols

MView specifications

Information


Unique identifier OMICS_15907
Name MView
Alternative name EBI-MView
Interface Web user interface
Restrictions to use None
Input data A protein sequence or a DNA sequence.
Input format BLAST, FASTA, PEARSON, CLUSTAL, MSF, PIR, HSSP
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Information


Unique identifier OMICS_15907
Name MView
Alternative name EBI-MView
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A protein sequence or a DNA sequence.
Input format BLAST, FASTA, PEARSON, CLUSTAL, MSF, PIR, HSSP
Output format HTML, FASTA, CLUSTAL, MSF, PIR, RDB
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png
github.png

Versioning


No version available

Documentation


MView citations

 (22)
library_books

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae

2018
PLoS Genet
PMCID: 5854411
PMID: 29505558
DOI: 10.1371/journal.pgen.1007251

[…] crtS sequences of Vibrionaceae in were found with BLAST []. The alignment was done with ClustalOmega [] and the layout with MView []. Additionally, crtS sites in 114 Vibrionaceae from NCBI were found with fuzznuc (http://www.hpa-bioinfotools.org.uk/pise/fuzznuc.html) by using the sequence CAGnATATGTAACTnATGCTTTCGG with a m […]

library_books

Pronounced strain specific chemosensory receptor gene expression in the mouse vomeronasal organ

2017
BMC Genomics
PMCID: 5727874
PMID: 29233099
DOI: 10.1186/s12864-017-4364-4

[…] []. Identified SNPs were incorporated into the reference sequences from Ensembl, and translated to proteins using the ExPASY online translate tool [], aligned using ClustalW [], and visualized using MView [] through the EMBL-EBI online web services []. Homologous sequences were identified using NCBI’s Blastn and Blastp []. Correlation analysis dendrograms were created in R by running PVclust [] u […]

library_books

Liver myofibroblasts of murine origins express mesothelin: Identification of novel rat mesothelin splice variants*

2017
PLoS One
PMCID: 5595315
PMID: 28898276
DOI: 10.1371/journal.pone.0184499

[…] t nucleotide sequences was performed with wild-type rat Mesothelin consensus coding sequence (NM_031658.1) as reference, and nucleotide sequence identity (as percentage) determined, using open-access MView tool from the EMBL-EBI bioinformatics web and programmatic tools framework [] (see ). […]

call_split

Post transcriptional regulation of 5' untranslated regions of human Transient Receptor Potential Vanilloid type 1 (TRPV 1) channels: role in the survival of glioma patients

2016
Oncotarget
PMCID: 5348411
PMID: 27829230
DOI: 10.18632/oncotarget.13132
call_split See protocol

[…] RegRNA 2.0 was used for identifying functional RNA motifs in 5’ UTR TRPV1 RNA sequence []. MView reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) and was used for TRPV1 variant transcripts comparative analysis []. The s […]

library_books

Genome sequence of Phormia regina Meigen (Diptera: Calliphoridae): implications for medical, veterinary and forensic research

2016
BMC Genomics
PMCID: 5084420
PMID: 27793085
DOI: 10.1186/s12864-016-3187-z

[…] ith an E-value cutoff of ≤ 1e-5. Gene sequences were individually annotated for gene structure using the web server version of the AUGUSTUS prediction tool [], aligned using MUSCLE [] and viewed with MVIEW []. For comparison purposes with other calliphorid or dipteran species, if the gene sequences were available in Genbank, they were acquired and included in our nucleotide (and subsequent predict […]

library_books

Identification of epitopes recognised by mucosal CD4+ T cell populations from cattle experimentally colonised with Escherichia coli O157:H7

2016
PMCID: 5010706
PMID: 27590451
DOI: 10.1186/s13567-016-0374-5

[…] ed for accession numbers using Batch Entrez (NCBI). R package seqinr was used to append annotations to tblastn query results. Intimin alignments were performed using Clustal Omega and formatted using MView (EBI). […]


Want to access the full list of citations?

MView reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MView