mVISTA pipeline

mVISTA specifications

Information


Unique identifier OMICS_26805
Name mVISTA
Interface Web user interface
Restrictions to use None
Input format FASTA
Programming languages Java
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline In Dubchak <>

Publications for mVISTA

mVISTA IN pipelines

 (2)
2017
PMCID: 5485006
PMID: 28261921
DOI: 10.1111/mec.14084

[…] identified and annotated. the annotations were used as a basis for generating locus schemes that were used for following the structural evolution of flc orthologues. gata (nix & eisen 2005), mvista (mayor et al. 2000; frazer et al. 2004), yass (noe & kucherov 2005) and clustalw (larkin et al. 2007; goujon et al. 2010; mcwilliam et al. 2013) were used for different aspects of sequence […]

2013
PMCID: 3750112
PMID: 23990796
DOI: 10.1371/journal.pgen.1003689

[…] with the myc-rarαb1 mrna with respect to control uninjected embryos., the genomic sequence flanking zebrafish hoxb5b (−8 to +8 kb) was compared with the corresponding region for hoxb5 in mouse using mvista. nhr scan was used to identify binding sites for nuclear receptor., rarαb1 was identified by using blast against the zebrafish genome (ensemble_v7) with the human and mouse rarα1 a domains. […]

mVISTA institution(s)
Department of Computer Science, Banting and Best Department of Medical Research, University of Toronto, Toronto, ON, Canada; Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA
mVISTA funding source(s)
Supported by grant HL066681, Berkeley-PGA, under the Programs for Genomic Applications, funded by National Heart, Lung and Blood Institute, by HG003988 funded by National Human Genome Research Institute, and performed under Department of Energy Contract DE-AC02-05CH11231, University of California and by NSERC Discovery grant.

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