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|Alternative name||Mining Yeast Binding Sites|
|Restrictions to use||None|
Publication for Mining Yeast Binding Sites
Functional Characterization of the Versatile MYB Gene Family Uncovered Their Important Roles in Plant Development and Responses to Drought and Waterlogging in Sesame
[…] assification of the R2R3-MYB genes in sesame was performed according to their phylogenetic relationships with the corresponding Arabidopsis AtMYB genes.To identify the orthologous genes of the sesame MYBs, we conducted a BLASTp search of their protein sequences against the protein database of Arabidopsis in TAIR. Hits with E-value ≤ 1e−40 and at least 70% similarity were considered significant . […]
Kiwifruit R2R3 MYB transcription factors and contribution of the novel AcMYB75 to red kiwifruit anthocyanin biosynthesis
[…] sicum) were included from UniPort (http://www.uniprot.org/) and Phytozome (http://www.phytozome.net/slycopersicum.php). Subsequent, BLAST searches were performed to check the predicted kiwifruit R2R3 MYBs with all the Arabidopsis and tomato R2R3 MYBs as queries. In addition, pair-end reads from our transcriptome data set were used to identify novel MYB candidates as previously described. Briefly, […]
Characterization of wheat MYB genes responsive to high temperatures
[…] ained sequences, specific primers for the six TaMYBs were designed using DNAMAN software (www.lynnon.com). DNA and cDNA were used as templates to amplify the DNA sequences and cDNA sequences of wheat MYBs, respectively. PCR was performed using high-fidelity PrimeSTAR Polymerase (TaKaRa, Japan) under the following conditions: 98 °C for 3 min; 34 cycles of 98 °C for 15 s, 58 °C for 30 s, and 72 °C f […]
Identification and Characterization of the Diverse Stress Responsive R2R3 RMYB Transcription Factor from Hibiscus sabdariffa L.
[…] r or at the transcription activation domain, thereby, creating a positive influence on the transcriptional activity. Phosphorylation often has an enhancement effect on the transcriptional activity of MYBs, as observed in Arabidopsis and Nicotiana tabacum [, ]. This divergent relationship reveals that the MYB family underwent a rapid expansion due to gene duplication, sequence deviation, and gene c […]
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae
[…] up-to-date, and up-graded in terms of the data enclosed in it and of the tools that have been developed to increase the ability to fully exploit the increasingly available data (–).Databases such as MYBS (), TRANSFAC (), RSAT (), YPA () and YeTFaSCo () focus most of their analysis and predictive power on the understanding of promoter regions, considering information that includes the occurrence o […]
Genome Wide Analysis of CCA1 Like Proteins in Soybean and Functional Characterization of GmMYB138a
[…] lantTFDB 4.0 (http://planttfdb.cbi.pku.edu.cn/). Meanwhile, soybean putative MYB proteins were identified using a HMM search (PF00249) and a key word search against the soybean databases, and 1R-type MYBs were subsequently isolated from the putative MYB sequences using SMART analysis. The consensus sequence SHAQK(Y/F)F was used as query to search CCA1-like proteins against all 1R-type MYB sequence […]
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