mycoCLAP specifications

Information


Unique identifier OMICS_07832
Name mycoCLAP
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline mycoCLAP

Publication for mycoCLAP

mycoCLAP citations

 (2)
library_books

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

2017
Biotechnol Biofuels
PMCID: 5609067
PMID: 28947916
DOI: 10.1186/s13068-017-0901-2

[…] ignal peptides in amino acid sequences of PCWDN enzymes (Additional file ). In order to assign the subcellular localization of enzymes, we used WoLF PSORT [, ] and ProtComp [] (Additional file ). The mycoCLAP database [, ] was used extensively to compile the list of biochemically characterized lignocellulose-active proteins of fungal origin. OrthoMCL [, , ] is a tool to identify orthologous gene p […]

library_books

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

2017
Biotechnol Biofuels
PMCID: 5294722
PMID: 28184248
DOI: 10.1186/s13068-017-0700-9

[…] 2 HMM-based search for structurally similar proteins [] identified similarity to B. subtilis YuiC (PDB 4wjt), which cleaves chitin oligosaccharides, with conservation of the catalytic residue []. The mycoCLAP database for characterised lignocellulolytic enzymes [] indicated similarity to the linker and chitosan-binding domain [] of GH75 chitosanases. These results suggest that An16g00670.Aspni5_12 […]

mycoCLAP institution(s)
Centre for Structural and Functional Genomics, Department of Computer Science and Software Engineering, Department of Chemistry and Biochemistry, and Department of Biology Concordia University, Montréal, QC, USA

mycoCLAP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review mycoCLAP