mycoCLAP specifications


Unique identifier OMICS_07832
Name mycoCLAP
Restrictions to use None
Maintained Yes


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Publication for mycoCLAP

mycoCLAP citations


Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

Biotechnol Biofuels
PMCID: 5609067
PMID: 28947916
DOI: 10.1186/s13068-017-0901-2

[…] ignal peptides in amino acid sequences of PCWDN enzymes (Additional file ). In order to assign the subcellular localization of enzymes, we used WoLF PSORT [, ] and ProtComp [] (Additional file ). The mycoCLAP database [, ] was used extensively to compile the list of biochemically characterized lignocellulose-active proteins of fungal origin. OrthoMCL [, , ] is a tool to identify orthologous gene p […]


Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

Biotechnol Biofuels
PMCID: 5294722
PMID: 28184248
DOI: 10.1186/s13068-017-0700-9

[…] 2 HMM-based search for structurally similar proteins [] identified similarity to B. subtilis YuiC (PDB 4wjt), which cleaves chitin oligosaccharides, with conservation of the catalytic residue []. The mycoCLAP database for characterised lignocellulolytic enzymes [] indicated similarity to the linker and chitosan-binding domain [] of GH75 chitosanases. These results suggest that An16g00670.Aspni5_12 […]

mycoCLAP institution(s)
Centre for Structural and Functional Genomics, Department of Computer Science and Software Engineering, Department of Chemistry and Biochemistry, and Department of Biology Concordia University, Montréal, QC, USA

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