MyMiner statistics

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Associated diseases

MyMiner specifications


Unique identifier OMICS_05232
Name MyMiner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline David Salgado <>

Publication for MyMiner

MyMiner in publications

PMCID: 5691355
PMID: 29220478
DOI: 10.1093/database/bax088

[…] information in the manual curation processes. with these solutions, the curation time is improved and possible mistakes from computational information extraction results are minimized. brat (), myminer (), argo () and egas () are state-of-the-art interactive solutions, aiming to simplify the annotation process., nonetheless, these efforts are still hindered by a lack of standardised ways […]

PMCID: 4331692
PMID: 25810773
DOI: 10.1186/1758-2946-7-S1-S2

[…] to the original pubmed records. no additional meta-data or automatically pre-tagged text was provided. we initially experimented with a pre-tagging strategy using a specially adapted version of the myminer system [] that included the option of pre-tagging the text with oscar4 and then manually correcting the labels. the automatic pre-tagging strategy had limitations in terms of performance […]

PMCID: 3629873
PMID: 23599415
DOI: 10.1093/database/bat020

[…] () have been improved, and its current performance allows its use on large scale projects (). finally, integrated ready-to-use workbenches have also been available, such as @note (), argo (), myminer () and textpresso (), although the performance and scalability to larger projects is still dubious for some of them. a comparison between some of them is found in this survey on annotation […]

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MyMiner institution(s)
Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria, Australia; Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain

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