myPhyloDB statistics

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Associated diseases

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myPhyloDB specifications

Information


Unique identifier OMICS_11409
Name myPhyloDB
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 1.1.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Daniel Manter <>

Publication for myPhyloDB

myPhyloDB in publication

PMCID: 5921754
PMID: 29703207
DOI: 10.1186/s12933-018-0708-x

[…] reads were concatenated and all combined 16┬ás sequences were filtered, trimmed and processed with the dada2 (r bioconductor package []) implementation included in the open source bioinformatics tool myphylodb version 1.2.1 (http://www.myphylodb.org/). briefly, all primers were removed from each sequence using the open source python program cutadapt [] and sequence variants were inferred using […]


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myPhyloDB institution(s)
USDA-ARS, Soil-Plant-Nutrient-Research, Fort Collins, CO, USA

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