myProMS statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool myProMS
info

Tool usage distribution map

This map represents all the scientific publications referring to myProMS per scientific context
info info

Associated diseases

This word cloud represents myProMS usage per disease context
info

Popular tool citations

chevron_left Peptide assignment validation Database search Protein inference chevron_right
Want to access the full stats & trends on this tool?

Protocols

myProMS specifications

Information


Unique identifier OMICS_30522
Name myProMS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Patrick Poullet

Publication for myProMS

myProMS citations

 (18)
call_split

Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex

2017
Sci Rep
PMCID: 5725533
PMID: 29229923
DOI: 10.1038/s41598-017-15253-4
call_split See protocol

[…] r software and the resulting spectra analyzed via the MascotTM Software (Thermo Scientific). All peptide/protein identification data were further processed using the Institut Curie developed software myProMS (http://myproms.curie.fr/)–, version 3.0. The mass spectrometry proteomics data were deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PX […]

library_books

Cancer associated fibroblasts induce metalloprotease independent cancer cell invasion of the basement membrane

2017
Nat Commun
PMCID: 5640679
PMID: 29030636
DOI: 10.1038/s41467-017-00985-8

[…] ble modifications. For identification, the false discovery rate (FDR) was set to 1% with Percolator q-values. The resulting files were further processed by using the Institut Curie-developed software myProMS version 3.0 (work in progress), which performs search engine results validation, false positive rate (FDR)-based data filtering, protein quantification, statistical analysis, and data visualiz […]

library_books

Modulating BAP1 expression affects ROS homeostasis, cell motility and mitochondrial function

2017
Oncotarget
PMCID: 5641149
PMID: 29069806
DOI: 10.18632/oncotarget.19872

[…] y of trypsin digestion and allowed 2 missed cleavage sites and we set the mass tolerances in MS and MS/MS to 2 ppm and 0.5 Da, respectively. The resulting Mascot files were further processed by using myProMS (v 3.0, []) and the estimated false discovery rate (FDR) by automatically filtering the Mascot score of all peptide identifications was set to 1 % (DT count). For SILAC-based protein quantific […]

call_split

Concerted action of the MutLβ heterodimer and Mer3 helicase regulates the global extent of meiotic gene conversion

2017
eLife
PMCID: 5215242
PMID: 28051769
DOI: 10.7554/eLife.21900.028
call_split See protocol

[…] , MA ) coupled to a LTQ-Orbitrap XL mass spectrometer (Thermo Scientific). Raw spectra were processed using Mascot through Proteome Discoverer (version 1.4, Thermo Scientific) and further analyzed in myProMS (). Data was searched against a Swissprot fasta database containing S. cerevisiae sequences. Only proteins found in two experiments and not in the control IPs were considered candidates. […]

library_books

Actin activates Pseudomonas aeruginosa ExoY nucleotidyl cyclase toxin and ExoY like effector domains from MARTX toxins

2016
Nat Commun
PMCID: 5150216
PMID: 27917880
DOI: 10.1038/ncomms13582

[…] to 20 most abundant ions detected in the Orbitrap MS scan. Proteome discoverer 1.3 (Thermo) with Mascot (matrixscience) was used for protein identification. Separate analyses were compared using the MyPROMS software. […]

library_books

Spatiotemporal control of interferon induced JAK/STAT signalling and gene transcription by the retromer complex

2016
Nat Commun
PMCID: 5150223
PMID: 27917878
DOI: 10.1038/ncomms13476

[…] ith Proteome Discoverer (version: 1.3, Thermo Scientific) and the SwissProt Homo sapiens (Human) Protein Database (20,233 sequences). The resulting Mascot result files were further processed by using myProMS and the estimated false discovery rate by automatically filtering the Mascot score of all peptide identifications was set to 1% (Qvality). […]


Want to access the full list of citations?
myProMS institution(s)
Institut Curie, Service de Bioinformatique, Paris, France

myProMS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review myProMS