MyriMatch pipeline

MyriMatch specifications

Information


Unique identifier OMICS_05383
Name MyriMatch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MyriMatch

MyriMatch citations

 (3)
2017
PMCID: 5327387

[…] spectra were searched against the c. thermocellum atcc 27405 proteome database – concatenated with common contaminants and reversed protein entries to assess false-discovery rates (fdr) – using myrimatch v. 2.160. peptide spectrum matches were filtered by idpicker v.361 (fdr < 1%), assigned matched-ion intensities, and peptide abundance distributions normalized and assembled to proteins […]

2016
PMCID: 4935971

[…] gleaned from the supplied proteome fasta database (acidilobus sp.7a and n. acidilobi protein sequences appended with common contaminants and decoy sequences to assess false-discovery rates) using myrimatch v. 2.1 (ref. 53). peptide-spectral matches were filtered (peptide- and protein-level false-discovery rates tested down to <1%) and assembled to their respective proteins using idpicker […]

2011
PMCID: 3154190

[…] exchange (scx) directly coupled to reversed phase liquid chromatography (rp-lc) prior to direct nano-spray mass spectrometry. the resulting peptides were searched against the uniprot database using myrimatch and the peptides were assembled into protein groups with idpicker. protein groups were minimized to contain one protein each and the resulting list was then analyzed with webgestalt […]

MyriMatch institution(s)
Mass Spectrometry Research Center / Departments of Biomedical Informatics and Biochemistry, Vanderbilt University Medical Center, Nashville, TN, USA

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