mySort specifications


Unique identifier OMICS_29645
Name mySort
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A file with mixture expression profiling data and a signature matrix.
Input format CSV+CSV
Output data A chart representing the composition of immune cells and a hierarchical cluster with bar plot.
Output format CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained No


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Publication for mySort

mySort citations


Unit testing, model validation, and biological simulation

PMCID: 5007758
PMID: 27635225
DOI: 10.5256/f1000research.10031.r15597

[…] eal numbers or strings”.If the input is neither a list of strings nor a list of numbers, return the same error message as above.In , we have given a suite of unit tests for a sorting algorithm called mySort based on this specification. The basic notion demonstrated in the context of the sorting algorithm extends to any piece of software. In OpenWorm, we make extensive use of unit testing to verify […]


Rank based edge reconstruction for scale free genetic regulatory networks

BMC Bioinformatics
PMCID: 2275249
PMID: 18237422
DOI: 10.1186/1471-2105-9-75

[…] ConstructedNet = Asymmetric-N(NumNodes, NC, NP, CorrelationMatrix)Step 1: for i = 1 to NumNodes   SortedNeighbor [i, 1:NumNodes - 1] = mySort(i, CorrelationMatrix);   if (i is a core node) Ni = NC; otherwise Ni = NP;Step 2: for i = 2 to NumNodes   for j = 1 to i - 1   if (j is in SortedNeighbor [i, 1:Ni] and i is in SortedNeighbor [j […]

mySort institution(s)
Institute of Information Science, Academia Sinica, Taipei, Taiwan; Institute of Statistics, National Chiao Tung University, Hsinchu, Taiwan; Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan; Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan; Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Taiwan; Institute of Fisheries Science, College of Life Science, National Taiwan University, Taipei, Taiwan
mySort funding source(s)
Supported by the Ministry of Science and Technology (MOST), Taiwan (through MOST 103– 2311-B-001 -033 -MY3, MOST 106-3114-B-038 -001 - and MOST106–2313-B001-010 and MOST 102–2811-B-001-046) and by flagship program from Institute of Information Science, Academia Sinica, Taiwan.

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