MZedDB statistics

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Associated diseases

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MZedDB specifications

Information


Unique identifier OMICS_07858
Name MZedDB
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline John Draper <>

Publication for MZedDB

MZedDB in publications

 (9)
PMCID: 5865180
PMID: 29572459
DOI: 10.1038/s41598-018-23110-1

[…] between treatment and control were not further analysed. for each mass,-ion (m/z) the annotation was made using a 3 ppm tolerance on their accurate mass. metabolomic annotation was made using mzeddb (http://maltese.dbs.aber.ac.uk:8888/hrmet/index.html), the e. coli metabolome database (ecmdb, http://ecmdb.ca/) and lipidmaps (http://www.lipidmaps.org/) databases, considering the following […]

PMCID: 5216087
PMID: 28111530
DOI: 10.1007/s11306-016-1152-0

[…] signal annotation, accurate m/z values were extracted from the un-binned matrix to enable direct identification of metabolites at 1–5 ppm directly in the first pass profile. these were queried using mzeddb, an interactive accurate mass annotation tool which can be used directly to annotate signals by means of neutral loss and/or adduct formation rules (draper et al. )., selected ion signals […]

PMCID: 5126067
PMID: 27965679
DOI: 10.3389/fpls.2016.01751

[…] time of 5 min. discriminatory metabolites were selected and tentatively identified by following statistical analyses and interrogation of kegg: kyoto encyclopedia of genes and genomes and mzeddb. to substantiate these identifications, nominal mass signals were investigated further by targeted nano-flow fourier transform-ion cyclotron resonance ultra-mass-spectrometry (ft-icr-ms) using […]

PMCID: 4877492
PMID: 27247806
DOI: 10.1155/2016/9740353

[…] with the variable score values as calculated by hierarchical cluster analysis applied to w∗c loadings of the pls-da model. the most discriminant mass features were tentatively annotated using mzeddb [] from the chemical formulas generated from the accurately measured masses (accuracy < 5 ppm) generated by the thermo xcalibur qual browser molecular formula engine. the kegg compound id […]

PMCID: 4783439
PMID: 27065761
DOI: 10.1007/s11306-016-0997-6

[…] plasma pools from randomized groups of dogs were prepared and reconstituted in methanol/water (80/20, v/v)., for metabolite signal identification, the accurate mass values were then queried using mzeddb, an interactive accurate mass annotation tool which can be used directly to annotate signals by means of neutral loss and/or adduct formation rules (draper et al. ). fie-msn was employed […]


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MZedDB institution(s)
Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Penglais Campus, Aberystwyth, UK

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