MzJava statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Glycosylation identification Peak detection Libraries/frameworks Spectral measurement Mass clustering chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

MzJava specifications

Information


Unique identifier OMICS_09676
Name MzJava
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Markus Müller <>

Publication for MzJava

MzJava in publications

 (2)
PMCID: 5654951
PMID: 29104575
DOI: 10.3389/fimmu.2017.01367

[…] was set as unspecific. the initial allowed mass deviation of the precursor ion was set to 6 ppm and the maximum fragment mass deviation was set to 20 ppm., an in-house java program based on the mzjava class library () was used to parse the maxquant results and organize them in a database (ipmsdb). the matching and scoring between ipmsdb and query peptides was done by another in-house java […]

PMCID: 5198984
PMID: 28033346
DOI: 10.1371/journal.pcbi.1005271

[…] and in silico protein digestion, i.e., it does not involve any conventional experimentation. furthermore, the analysis stands on the shoulders of well-established software tools, namely psortb [], mzjava [], speclust [] and mrbayes []. the aim is to be able to generate a valid and manageable list of peptides that are potentially specific to each strain. this list could […]


To access a full list of publications, you will need to upgrade to our premium service.

MzJava institution(s)
Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; Centre Universitaire de Bioinformatique, University of Geneva, Geneva, Switzerland

MzJava reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MzJava