MzJava statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Glycosylation identification Peak detection Libraries/frameworks Spectral measurement Mass clustering chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

MzJava specifications


Unique identifier OMICS_09676
Name MzJava
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes


Add your version


  • person_outline Markus Müller <>

Publication for MzJava

MzJava in publications

PMCID: 5654951
PMID: 29104575
DOI: 10.3389/fimmu.2017.01367

[…] was set as unspecific. the initial allowed mass deviation of the precursor ion was set to 6 ppm and the maximum fragment mass deviation was set to 20 ppm., an in-house java program based on the mzjava class library () was used to parse the maxquant results and organize them in a database (ipmsdb). the matching and scoring between ipmsdb and query peptides was done by another in-house java […]

PMCID: 5198984
PMID: 28033346
DOI: 10.1371/journal.pcbi.1005271

[…] and in silico protein digestion, i.e., it does not involve any conventional experimentation. furthermore, the analysis stands on the shoulders of well-established software tools, namely psortb [], mzjava [], speclust [] and mrbayes []. the aim is to be able to generate a valid and manageable list of peptides that are potentially specific to each strain. this list could […]

To access a full list of publications, you will need to upgrade to our premium service.

MzJava institution(s)
Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; Centre Universitaire de Bioinformatique, University of Geneva, Geneva, Switzerland

MzJava reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MzJava