MZmine protocols

MZmine specifications


Unique identifier OMICS_02385
Name MZmine
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 2.17
Stability Stable
Maintained Yes


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  • person_outline Tomáš Pluskal <>

Publications for MZmine

MZmine IN pipelines

PMCID: 4495376
PMID: 26065494
DOI: 10.3390/metabo5020344

[…] and analyze metabolomics data, particularly for gc/ms data. some of them focus on pre-processing raw data, but include advanced methods for alignment, peak detection and identification, such as mzmine [57]. others, like the web application meltdb, addresses issues concerning metabolomics data storage, sharing, standardization and a binding to r software packages to allow the application […]

PMCID: 2694917
PMID: 19229523
DOI: 10.1007/s00216-009-2662-7

[…] further restricts the number of sets of parameters that can be assessed. in markerlynx™, the user is only required to enter the values in the beginning, and no further user input is necessary. for mzmine, first, the user needs to load and read the data, then define the peak detection parameter and in a third step, align the data. if required, the marker for the internal standard must be found […]

MZmine institution(s)
Turku Centre for BiotechnologyTurku, Finland; VTT Technical Research Centre of FinlandEspoo, Finland

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