mzML2ISA specifications

Information

Unique identifier	OMICS_17510
Name	mzML2ISA
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Input format	mzML, imzML
Operating system	Windows
Programming languages	Python
License	GNU General Public License version 3.0
Computer skills	Advanced
Stability	Stable
Requirements	pronto
Maintained	Yes

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Documentation

Documentation: http://2isa.readthedocs.io/en/latest/mzml2isa/install.html

Maintainer

Reza M. Salek <>

Publication for mzML2ISA

MzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data.

2017 Bioinformatics

PMCID: 5870861

PMID: 28402395

DOI: 10.1093/bioinformatics/btx169

Salek

mzML2ISA in publication

Compliance with minimum information guidelines in public metabolomics repositories

PMCID: 5613734

PMID: 28949328

DOI: 10.1038/sdata.2017.137

[…] be addressed by systematically capturing experimental meta-data via laboratory information management systems (lims) during experiments as proposed by rocca-serra et al., or by tools such as mzml2isa that can generate partially filled reporting templates for metabolights., the need for data sharing and reuse is now very well established and has been adopted and promoted by all major […]

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mzML2ISA institution(s)

École Normale Supérieure de Cachan, Cachan, France; School of Biosciences, University of Birmingham, Birmingham, UK; Phenome Centre Birmingham, University of Birmingham, Birmingham, UK; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK; University of Oxford e-Research Centre, Oxford, UK

mzML2ISA funding source(s)

Supported by a NERC CASE PhD studentship with GigaScience, grant number NE/L002493/1; BBSRC, grant numbers BB/L005077/1, BB/M019985/1 and BB/M027635/1; MRC UK MEDical BIOinformatics partnership, grant number MR/L01632X/1; and the PhenoMeNal European Commission’s Horizon2020 programme, grant number 654241.

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