mzML2ISA specifications

Information


Unique identifier OMICS_17510
Name mzML2ISA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format mzML, imzML
Operating system Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
pronto
Maintained Yes

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Documentation


Maintainer


  • person_outline Reza M. Salek <>

Publication for mzML2ISA

library_books

MzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data.

2017 Bioinformatics
PMCID: 5870861
PMID: 28402395
DOI: 10.1093/bioinformatics/btx169
Salek
Salek
Salek
Salek
Salek
Salek

mzML2ISA in publication

PMCID: 5613734
PMID: 28949328
DOI: 10.1038/sdata.2017.137

[…] be addressed by systematically capturing experimental meta-data via laboratory information management systems (lims) during experiments as proposed by rocca-serra et al., or by tools such as mzml2isa that can generate partially filled reporting templates for metabolights., the need for data sharing and reuse is now very well established and has been adopted and promoted by all major […]


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mzML2ISA institution(s)
École Normale Supérieure de Cachan, Cachan, France; School of Biosciences, University of Birmingham, Birmingham, UK; Phenome Centre Birmingham, University of Birmingham, Birmingham, UK; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK; University of Oxford e-Research Centre, Oxford, UK
mzML2ISA funding source(s)
Supported by a NERC CASE PhD studentship with GigaScience, grant number NE/L002493/1; BBSRC, grant numbers BB/L005077/1, BB/M019985/1 and BB/M027635/1; MRC UK MEDical BIOinformatics partnership, grant number MR/L01632X/1; and the PhenoMeNal European Commission’s Horizon2020 programme, grant number 654241.

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