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mzWiff specifications


Unique identifier OMICS_19523
Name mzWiff
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 4.3.1
Analyst library from ABI/MDS Sciex
Maintained No



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mzWiff in publications

PMCID: 5614626
PMID: 28955739
DOI: 10.1016/j.bbrep.2017.01.011

[…] and eluted off of a capillary c-18 reverse-phase column using an h2o/acetonitrile gradient, then fragmented in the qtrap. columns were washed between sample analyses. the spectra were analyzed using mzwiff (seattle proteome center [spc]), which requires the analyst library (analyst 1.4.2 software [applied biosystems mds sciex]) and the resulting peptide masses were identified using […]

PMCID: 4161349
PMID: 25211023
DOI: 10.1371/journal.pone.0105984

[…] on a 1 s mass spectrometry survey scan followed by up to two (qstar xl) ms/ms scans of 3 s each. ms and ms/ms data were acquired in centroid mode. qstar data were converted to the mzxml format with mzwiff (version 4.3.1). these sequences represent the prime side products of ttsp cleavage. the corresponding non-prime side sequences were derived from human proteome databases using bioinformatics […]

PMCID: 5528505
PMID: 24120346
DOI: 10.1016/j.molonc.2013.09.003

[…] xl, each ms scan was followed by a maximum of five ms/ms scans; in case of the qstar elite of three ms/ms scans., raw qstar lc‐ms/ms data in wiff format was converted to the mzxml () format, using mzwiff (version 4.3.1,, with centroiding of ms1 and ms2 data, precursor charge determination, and deisotoping of ms2 data. […]

PMCID: 3430680
PMID: 22952947
DOI: 10.1371/journal.pone.0044283

[…] identical to those used in cationic metabolite analysis ., we first visualised the raw data in analyst qs to check for any problems in the ce-ms. the data were then converted into mzxml format using mzwiff for agilent “.wiff” and trapper for agilent “.d” formats, using the following parameters:, mzwiff.exe -z -c1 -v –mzxml <filename>, trapper.exe -c -v –mzxml <filename>, data […]

PMCID: 3311572
PMID: 22369182
DOI: 10.1186/1477-5956-10-13

[…] prior to acquisition of lc-ms data (figure ). the data are available at the raw lc-ms data were exported as .wiff files and converted to mzxml format using mzwiff (version 4.2.1) or msconvert from proteowizard (version 2.2) [] before importing them into the software tools. due to the compatibility issue between converters and analysis tools, data […]

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